View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8452_low_10 (Length: 306)

Name: NF8452_low_10
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8452_low_10
NF8452_low_10
[»] chr8 (2 HSPs)
chr8 (102-290)||(24062359-24062547)
chr8 (14-82)||(24062307-24062375)
[»] chr7 (4 HSPs)
chr7 (137-270)||(12389837-12389971)
chr7 (137-270)||(12396012-12396146)
chr7 (163-271)||(18000011-18000120)
chr7 (12-76)||(47104415-47104479)
[»] chr6 (2 HSPs)
chr6 (153-265)||(30755069-30755181)
chr6 (153-194)||(14487565-14487605)
[»] chr4 (3 HSPs)
chr4 (142-252)||(17543461-17543571)
chr4 (142-256)||(11924133-11924245)
chr4 (144-200)||(12410461-12410518)
[»] chr3 (2 HSPs)
chr3 (163-267)||(30084302-30084406)
chr3 (153-267)||(30177710-30177824)
[»] chr2 (2 HSPs)
chr2 (142-227)||(18117577-18117661)
chr2 (142-254)||(18332364-18332474)
[»] chr5 (2 HSPs)
chr5 (146-246)||(25559468-25559568)
chr5 (147-251)||(34179050-34179154)
[»] scaffold0070 (1 HSPs)
scaffold0070 (142-197)||(46336-46391)
[»] scaffold0431 (1 HSPs)
scaffold0431 (163-199)||(14133-14169)
[»] scaffold1924 (1 HSPs)
scaffold1924 (142-206)||(1163-1228)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 290
Target Start/End: Original strand, 24062359 - 24062547
Alignment:
Q  102 atagttaaaattattgatgactacctataacttcaatttatcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  24062359 atagttaaaattattgatgactacctataacttcaatttatcttttgctagagtctagttaagctctgattagggtatcagacatttatgtttattgtca 24062458  T
Q  202 tttattcgttgttggattttatttgatgagattatggttatgtatttgaaacctgcgatatggtgttgaaattcattcacccatgtatt 290  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24062459 tttattcattgttggattttatttgatgagattatggttatgtatttgaaacctgcgatatggtgttgaaattcatttacccatgtatt 24062547  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 24062307 - 24062375
Alignment:
Q  14 agaccatggtatacaaataataaacttgcctattaaatgtttgtagaagcccatagttaaaattattga 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24062307 agaccatggtatacaaataataaacttgcctattaaatgtttgcagaagcccatagttaaaattattga 24062375  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 12389837 - 12389971
Alignment:
Q  137 atttatcttttgctaga-gtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagatta 235  Q
    ||||| |||||||| || ||| |||||||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  12389837 atttaccttttgctcgaagtctagttaggctctagttagagtgtcagacatttatgtttattgtcatttatttgttgttggattttatttgttgagacta 12389936  T
Q  236 tggttatgtatttgaaacctgcgatatggtgttga 270  Q
    |||||||||||||||| |||| |||| | ||||||    
T  12389937 tggttatgtatttgaatcctgagatacgatgttga 12389971  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 12396012 - 12396146
Alignment:
Q  137 atttatcttttgctaga-gtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagatta 235  Q
    ||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||| ||    
T  12396012 atttaccttttgctcgaagtctagttaggctctgattagagtgtcagacatttatgtttattgtcatttatctgttgttagattttatttgttgagacta 12396111  T
Q  236 tggttatgtatttgaaacctgcgatatggtgttga 270  Q
    | |||||||||||||||| || |||||| ||||||    
T  12396112 tagttatgtatttgaaacttgagatatgatgttga 12396146  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 18000011 - 18000120
Alignment:
Q  163 ggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttgga-ttttatttgatgagattatggttatgtatttgaaacctgcgata 261  Q
    |||||||||||||||||  | ||||||||||||||||||||||| | |||||| | ||||||| ||||||| ||||||||||||||||||||||| || |    
T  18000011 ggctctgattagggtgttgggcatttatgtttattgtcatttatccattgttgaatttttattcgatgagactatggttatgtatttgaaacctgagaca 18000110  T
Q  262 tggtgttgaa 271  Q
    ||| ||||||    
T  18000111 tggcgttgaa 18000120  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 47104415 - 47104479
Alignment:
Q  12 agagaccatggtatacaaataataaacttgcctattaaatgtttgtagaagcccatagttaaaat 76  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||| ||||||||    
T  47104415 agagaccatggtataaaaataagaaacttgtctattaaatgtttgaagaagcccatggttaaaat 47104479  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 30755069 - 30755181
Alignment:
Q  153 agtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtatttgaaa 252  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||| ||||||  |||||||||||||||||| ||||| |||||||||||||||||||    
T  30755069 agtctagttaggctctggttagggtgtcgaacatttatgtttattgttatttatctgttgttggattttatttgttgagactatggttatgtatttgaaa 30755168  T
Q  253 cctgcgatatggt 265  Q
    |||| ||||||||    
T  30755169 cctgagatatggt 30755181  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 14487565 - 14487605
Alignment:
Q  153 agtccagttaggctctgattagggtgtcagacatttatgttt 194  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  14487565 agtctagttaggctctgattagggtgtcag-catttatgttt 14487605  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 17543461 - 17543571
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggtta 241  Q
    ||||||||| ||||| ||||||||||||||||||||||| |  ||||||||||||||| || | | |||||||||||||||||||| || |||||  |||    
T  17543461 tcttttgctcgagtctagttaggctctgattagggtgtcgggtatttatgtttattgttatctctccgttgttggattttatttgaggaaattataatta 17543560  T
Q  242 tgtatttgaaa 252  Q
    |||||||||||    
T  17543561 tgtatttgaaa 17543571  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 11924133 - 11924245
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggtta 241  Q
    ||||||||| ||||| ||||||||||||||||||| ||| |  |||||||||||||| || ||||   ||||| || ||||||||  |||||||||||||    
T  11924133 tcttttgctcgagtctagttaggctctgattagggagtcgggaatttatgtttattgaca-ttatctattgtt-gaatttatttgtggagattatggtta 11924230  T
Q  242 tgtatttgaaacctg 256  Q
    |||||||||||||||    
T  11924231 tgtatttgaaacctg 11924245  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 12410461 - 12410518
Alignment:
Q  144 ttttgctagagtccagttagg-ctctgattagggtgtcagacatttatgtttattgtc 200  Q
    ||||||| ||||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  12410461 ttttgctcgagtctagttagggctctgattagggtgtcaaccatttatgtttattgtc 12410518  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 30084302 - 30084406
Alignment:
Q  163 ggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtatttgaaacctgcgatat 262  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||| ||||| ||||||| |||||||||||| || | ||||||||| ||||||| |||||    
T  30084302 ggctctgattagggtgtcgaacatttttgtttattgtcttttatccgttgctggatttgatttgatgagatcatagctatgtatttaaaacctgagatat 30084401  T
Q  263 ggtgt 267  Q
    |||||    
T  30084402 ggtgt 30084406  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 30177710 - 30177824
Alignment:
Q  153 agtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgtatttgaaa 252  Q
    |||| ||||||||||||||||||||||    ||||||| ||||||||| |||||  |||||||||||| |||||||||||  |||| ||||||||| |||    
T  30177710 agtctagttaggctctgattagggtgtggagcatttatatttattgtcttttatctgttgttggatttgatttgatgagaccatggctatgtatttaaaa 30177809  T
Q  253 cctgcgatatggtgt 267  Q
    |||  ||||||||||    
T  30177810 cctaagatatggtgt 30177824  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 18117661 - 18117577
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttga 227  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||| | ||||||||||||||||||||    
T  18117661 tcttttgctcgagtcttgttaggctctgattagggtgtcagacatttacg-ttattttcatttgtccgttgttggattttatttga 18117577  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 18332364 - 18332474
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggtta 241  Q
    |||||| || ||||| |||||| |||| ||||||||||||||||||||||||||||| || ||||  | |||| || ||||||||  |||||||||||||    
T  18332364 tctttttctcgagtctagttagactctaattagggtgtcagacatttatgtttattgaca-ttatctgatgtt-gaatttatttgtggagattatggtta 18332461  T
Q  242 tgtatttgaaacc 254  Q
    | |||| ||||||    
T  18332462 tctattcgaaacc 18332474  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 25559468 - 25559568
Alignment:
Q  146 ttgctagagtccagttaggctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgta 245  Q
    ||||| ||||| ||||||||||| |||||||||||   |||||||||||  |||||| ||| |||| |||||||||||||||||||| ||||||| ||||    
T  25559468 ttgctcgagtctagttaggctctaattagggtgtcgagcatttatgttttctgtcatctatccgtttttggattttatttgatgagactatggttttgta 25559567  T
Q  246 t 246  Q
    |    
T  25559568 t 25559568  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 34179050 - 34179154
Alignment:
Q  147 tgctagagtccagttagg-ctctgattagggtgtcagacatttatgtttattgtcatttattcgttgttggattttatttgatgagattatggttatgta 245  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||  | ||||||||||||||| ||| ||||| | || |||||||    
T  34179050 tgcttgagtctagttagggctctgattagggtgtcggacatttatgtttatcgtcgttattccgttgttggattttacttgttgagact-tgattatgta 34179148  T
Q  246 tttgaa 251  Q
    ||||||    
T  34179149 tttgaa 34179154  T

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Target: scaffold0070 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 46391 - 46336
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatgtttatt 197  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  46391 tcttttgctcgagtctagttaggctctgattaggatgtcagacatttatgtttatt 46336  T

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Target: scaffold0431 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 14133 - 14169
Alignment:
Q  163 ggctctgattagggtgtcagacatttatgtttattgt 199  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14133 ggctctgattagggtgtcggacatttatgtttattgt 14169  T

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Target: scaffold1924 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 1163 - 1228
Alignment:
Q  142 tcttttgctagagtccagttaggctctgattagggtgtcagacatttatg-tttattgtcatttat 206  Q
    ||||||||| || || |||||||||||||||||||||||   |||||||| |||||| ||||||||    
T  1163 tcttttgctcgaatctagttaggctctgattagggtgtcgagcatttatgttttattttcatttat 1228  T

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