View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_11 (Length: 303)
Name: NF8452_low_11
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_11 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 36234014 - 36233764
Alignment:
| Q |
17 |
tactgtttcgttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatcttata |
116 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36234014 |
tactgcttcgttaacaacggcatggtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatctcgta |
36233915 |
T |
|
| Q |
117 |
ag-----tatcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaaca |
211 |
Q |
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| T |
36233914 |
aagcgtctatcgtgatcttagttcatatgtagggaggggcataataaaaaatttgttttctcggattagtggttgaaccccattgtatatcttcaaaaca |
36233815 |
T |
|
| Q |
212 |
tgcaatttcttgacttattgtaatcgacttggagtaccccttgtattcaatt |
263 |
Q |
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| T |
36233814 |
tgtaatttcttgacttattgtaatggacttggagta-cccttgtattcaatt |
36233764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 29415993 - 29416040
Alignment:
| Q |
256 |
attcaattgtgtgtgaaacttcttagatccacattgcgtatacaaagc |
303 |
Q |
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| T |
29415993 |
attcaattgtgtgtgaaacttctgagatccacattgcgtatacaaagc |
29416040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 8541 - 8754
Alignment:
| Q |
26 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatcttataagtatcgtg |
125 |
Q |
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||||||||||| |||||||| ||||||||| |||||||||||| || ||||| | |||||||||||| |||| || |||||| ||||||| |
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| T |
8541 |
gttaacaacggggtggtgtatttggatggaacataatgatgttctcattaaaggcaaagttgcaaatgctttggaggtggtc-----------tatcgtg |
8629 |
T |
|
| Q |
126 |
atcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgac |
225 |
Q |
| |
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|| || |||||||| ||||||||||| ||||||| ||| |||||| ||||| ||| | |||||||||||||| ||||||||||||| |||| ||||| |
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| T |
8630 |
attttggttcatatatggggaggggcgtaataaatttttt-ttttcttggattggtgcttgaaccccattgtatgtcttcaaaacatgttattttttgac |
8728 |
T |
|
| Q |
226 |
ttattgtaatcgacttggagtacccc |
251 |
Q |
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||||| |||| | ||| ||||||||| |
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| T |
8729 |
ttattataatgggctttgagtacccc |
8754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 30219319 - 30219203
Alignment:
| Q |
132 |
gttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattg |
231 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| ||||| ||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
30219319 |
gttcatat-tggggaggggcataataaaaaatttgtttcctcagattggtggttaaaccctattatatgtcttcaaaacatgtaatttcttgacttattg |
30219221 |
T |
|
| Q |
232 |
taatcgacttggagtacc |
249 |
Q |
| |
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|||| | ||| ||||||| |
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| T |
30219220 |
taatgggcttcgagtacc |
30219203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 19596504 - 19596741
Alignment:
| Q |
26 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagt-aaagttgcaaattctttagaagtggtcaatcttat-aag----t |
119 |
Q |
| |
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|||||||||| ||||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||| |||| |||||||| ||| || ||| | |
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| T |
19596504 |
gttaacaacgacgtggtgtatttggatggagtgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacattaagcgtct |
19596603 |
T |
|
| Q |
120 |
atcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaattt |
219 |
Q |
| |
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||||||||||| |||||| ||||||||||||| |||||||| |||||||||| ||||| || || ||||||||||| || | |||||| |||| ||||| |
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| T |
19596604 |
atcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggttgttgaaccccattgcatgtattcaaagcatgtaattt |
19596703 |
T |
|
| Q |
220 |
cttgactt-attgtaatcgacttggagtaccccttgta |
256 |
Q |
| |
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| |||||| ||||||| | ||| ||||||||| |||| |
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| T |
19596704 |
cctgacttctttgtaatgggcttcgagtaccccatgta |
19596741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 19754830 - 19754593
Alignment:
| Q |
26 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagt-aaagttgcaaattctttagaagtggtcaatcttataag-----t |
119 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| ||||||| || |||| ||||| |||||| ||||| |||| |||||||| ||| |||| | |
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| T |
19754830 |
gttaacaacgacgtggtgtatttggattgagcgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtct |
19754731 |
T |
|
| Q |
120 |
atcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaattt |
219 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||| |||||||||| ||||| ||||| ||||| |||| || | |||||| ||| ||||| |
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| T |
19754730 |
atcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaattgcatgtattcaaagcatataattt |
19754631 |
T |
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| Q |
220 |
cttgactt-attgtaatcgacttggagtaccccttgta |
256 |
Q |
| |
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| |||||| ||||||| | ||| ||||||||| |||| |
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| T |
19754630 |
cctgacttctttgtaatgggctttgagtaccccatgta |
19754593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 29871859 - 29871754
Alignment:
| Q |
127 |
tcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgact |
226 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||| ||| ||||||| ||| ||||| |||||| ||||||| ||| | ||||||| ||||| | |||| |
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|
| T |
29871859 |
tcttcgttcatttgtggggaagggcataataaaaactttattttctcatattggtggttgaacccaattgtatgtctactaaacatgtaatttttcgact |
29871760 |
T |
|
| Q |
227 |
tattgt |
232 |
Q |
| |
|
|||||| |
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|
| T |
29871759 |
tattgt |
29871754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 259
Target Start/End: Original strand, 33906169 - 33906288
Alignment:
| Q |
142 |
ggggaggg-gcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaa-tttcttgacttattgtaatcgac |
239 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||| |||| ||||| |||| |||||||||||||||||| ||| || ||| || |||||||||||| | | |
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| T |
33906169 |
ggggagggagcatgataaaaaaattgttttctaggatcggtggttgaacaacattgtatatcttcaaaatatgtaattttttttacttattgtaataggc |
33906268 |
T |
|
| Q |
240 |
ttggagtaccccttgtattc |
259 |
Q |
| |
|
|| ||||| | ||||||||| |
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| T |
33906269 |
ttcgagtatctcttgtattc |
33906288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 35283443 - 35283338
Alignment:
| Q |
125 |
gatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttga |
224 |
Q |
| |
|
|||||| |||||| |||| |||||| | ||||||||||||||||||||| | | ||||| | |||| |||| || ||||| || |||| |||||||||| |
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| T |
35283443 |
gatcttggttcatttgtgaggagggacgtaataaaaaatttgttttctcataatggtggttggacccaattggatgtcttcgaagcatgtaatttcttga |
35283344 |
T |
|
| Q |
225 |
cttatt |
230 |
Q |
| |
|
|||||| |
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|
| T |
35283343 |
cttatt |
35283338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 27479387 - 27479437
Alignment:
| Q |
26 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaa |
76 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||| ||||||| |
|
|
| T |
27479387 |
gttaacaacggcgtggtgtatttagatggagcgtaatgatgttctctttaa |
27479437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 39286500 - 39286694
Alignment:
| Q |
41 |
gtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatcttataag-----tatcgtgatcttagttc |
135 |
Q |
| |
|
||||| || |||||||| |||||||||| |||||||| ||||||||||||| ||| || ||||| ||| |||| |||||||||||| |||| |
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| T |
39286500 |
gtgtattttgatggagcgtaatgatgttctctttaaagataaagttgcaaatgatttggaggtggttgatcacataaagcgtctatcgtgatcttggttc |
39286599 |
T |
|
| Q |
136 |
atatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattgtaat |
235 |
Q |
| |
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| ||||| |||| | |||| ||||||||||| ||| ||| ||||| |||||||||||||| |||| | ||||| ||||| ||||||||||||||| |
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|
| T |
39286600 |
aaatgtg---agggacgtaatgaaaaatttgtt--ctcagatcggtggttgaaccccattgtatgtctttcacacatgtaatttattgacttattgtaat |
39286694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 27479500 - 27479599
Alignment:
| Q |
132 |
gttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattg |
231 |
Q |
| |
|
||||||||||||| | |||| |||||||||| |||||||| | ||| ||||| ||||| |||||||| |||| |||||| | || ||||| ||||||| |
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| T |
27479500 |
gttcatatgtgggtaagggcgtaataaaaaa--tgttttcttgaattggtggttgaacctcattgtatgtctttaaaacacgtaacttctttgcttattg |
27479597 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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