View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_13 (Length: 243)
Name: NF8452_low_13
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23283427 - 23283200
Alignment:
| Q |
1 |
tttattttgtgttgaattggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23283427 |
tttattttgtgttgaattggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtgg |
23283328 |
T |
|
| Q |
101 |
aggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23283327 |
aggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaact |
23283228 |
T |
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| Q |
201 |
tctaaaattgaagagtttggttttgttt |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
23283227 |
tctaaaattgaagagtttggttttgttt |
23283200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 23289750 - 23289548
Alignment:
| Q |
18 |
tggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaat |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||| |
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| T |
23289750 |
tggaagaagaggaagaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaat |
23289651 |
T |
|
| Q |
118 |
gtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtt |
217 |
Q |
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| T |
23289650 |
gtcccctacacatagttttgagcatgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtt |
23289554 |
T |
|
| Q |
218 |
tggttt |
223 |
Q |
| |
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|||||| |
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| T |
23289553 |
tggttt |
23289548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 23257760 - 23257568
Alignment:
| Q |
37 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatg |
136 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||| | |
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| T |
23257760 |
gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagcttt |
23257661 |
T |
|
| Q |
137 |
gag---catg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttt |
223 |
Q |
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||| |||| |||||||| || || || ||||||||||||||||||| |||||||| |||||||||||||||| || | | ||||||||| |
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| T |
23257660 |
gagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttggttt |
23257568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 23247370 - 23247200
Alignment:
| Q |
39 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatgga |
138 |
Q |
| |
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|||||||||||||||||||||| || || | |||||| ||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||| | || |
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| T |
23247370 |
tgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttga |
23247271 |
T |
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| Q |
139 |
g---catgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaa |
206 |
Q |
| |
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| T |
23247270 |
gtatcatgagtatgacgatattcatgtacaagattttcaagatgatgaggtatcactatggaacttttaaa |
23247200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 23251782 - 23251612
Alignment:
| Q |
39 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatag-tatgg |
137 |
Q |
| |
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||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
23251782 |
tgaatatgtttcgtgttgaagtcgaa---gaagaggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg |
23251686 |
T |
|
| Q |
138 |
--agcatg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaa |
206 |
Q |
| |
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| |||| |||||||| || || || ||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
23251685 |
gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaa |
23251612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 23266315 - 23266146
Alignment:
| Q |
37 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatg |
136 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| | || | |||||||||||||| ||||||||||||||||||| | |
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| T |
23266315 |
gttgaatatgttttgtgtggaag------aagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagcttt |
23266222 |
T |
|
| Q |
137 |
gag---catgag---tatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaa |
206 |
Q |
| |
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||| ||||| |||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
23266221 |
gagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaa |
23266146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 23593086 - 23593016
Alignment:
| Q |
62 |
gaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatag |
132 |
Q |
| |
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|||||||| |||||||||||||| || |||| || |||||||||||| ||||||||||||||||||| |
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| T |
23593086 |
gaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatag |
23593016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 23633870 - 23633773
Alignment:
| Q |
100 |
gaggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatgga |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| |||||||| |||| || ||||| ||| ||||||||||| ||||| || ||||||| |
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| T |
23633870 |
gaggaatatggctctaatgtcccctacacatagcttggggcatgagtttgaacatattgatcatggagattttcaagatgatgaggtgtcactatgga |
23633773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 23391076 - 23391036
Alignment:
| Q |
158 |
gatttacaagactttcaagatgaagaggtatccctatggaa |
198 |
Q |
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||||||||||| |||||||||||||||||||| || ||||| |
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| T |
23391076 |
gatttacaagattttcaagatgaagaggtatcactgtggaa |
23391036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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