View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8452_low_14 (Length: 241)
Name: NF8452_low_14
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 32371697 - 32371530
Alignment:
| Q |
1 |
aaggcagagttatgcctttgaaagcataaaacctaacattttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactagattcnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32371697 |
aaggcagagttatgcctttgaaagcataaaagctaacattttt-gatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactagatt---- |
32371603 |
T |
|
| Q |
101 |
nnnnnnnnccttctagtgaacgatattatccagcttctagtgattgataatcacaatcttagtctctagacat |
173 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
32371602 |
ttttttttccttctagtgatcgatattatccagcttctagtgatcgataatcacaatcttagtctcttgacat |
32371530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 32357192 - 32357089
Alignment:
| Q |
123 |
atattatccagcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaa-aaaataagctgacccactcaaggctatttgacataa |
221 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | |
|
|
| T |
32357192 |
atattatccagcttctagtgatagatagtcacaatcttagtttctagacatgttttggaggaaaaaaataacctga-ccactcaaggttatttgacatca |
32357094 |
T |
|
| Q |
222 |
taaat |
226 |
Q |
| |
|
||||| |
|
|
| T |
32357093 |
taaat |
32357089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 32365152 - 32365224
Alignment:
| Q |
16 |
ctttgaaagcataaaacctaacattttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaa |
88 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32365152 |
ctttgaaagcataaaaggtaacattttttaatgcataaaaggccagtcaatttgtgtaaagagtgcctcacaa |
32365224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 32364860 - 32364939
Alignment:
| Q |
132 |
agcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaaaaaataagctgacccactcaaggctatt |
213 |
Q |
| |
|
||||||||||||| |||| | | ||||||| | ||||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
32364860 |
agcttctagtgatagatagttagaatcttaatttctagac--gttttggaggaaaaaataacctgacccactcaaggttatt |
32364939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32357427 - 32357335
Alignment:
| Q |
1 |
aaggcagagttatgcctttgaaagcataaaacctaacattttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactag |
93 |
Q |
| |
|
|||| |||||| |||| |||| ||||||||||||| || | | ||||||||||||||||||| || ||||||||| ||| ||||||||||| |
|
|
| T |
32357427 |
aaggaagagttctgccggtgaaggcataaaacctaaacttctctaatgcataaaaggccagtcagttggtgtaaagaatacttcacaaactag |
32357335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University