View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8452_low_16 (Length: 240)

Name: NF8452_low_16
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8452_low_16
NF8452_low_16
[»] chr6 (18 HSPs)
chr6 (18-240)||(33057331-33057553)
chr6 (18-240)||(33644561-33644795)
chr6 (21-240)||(33304240-33304471)
chr6 (18-240)||(33262379-33262613)
chr6 (18-240)||(9166514-9166739)
chr6 (21-240)||(33398828-33399041)
chr6 (52-240)||(33271582-33271779)
chr6 (18-240)||(33387907-33388141)
chr6 (18-129)||(33285347-33285458)
chr6 (146-240)||(33409865-33409959)
chr6 (18-119)||(28870323-28870424)
chr6 (157-237)||(33285501-33285581)
chr6 (52-114)||(31562983-31563045)
chr6 (150-240)||(31562839-31562935)
chr6 (156-232)||(28870198-28870274)
chr6 (55-127)||(33409768-33409840)
chr6 (156-206)||(33358799-33358849)
chr6 (87-128)||(33358714-33358755)
[»] chr2 (1 HSPs)
chr2 (27-240)||(17440901-17441114)
[»] scaffold1408 (1 HSPs)
scaffold1408 (18-240)||(397-631)
[»] scaffold0428 (1 HSPs)
scaffold0428 (18-240)||(6143-6377)
[»] chr4 (8 HSPs)
chr4 (76-232)||(31148108-31148267)
chr4 (146-240)||(31479029-31479123)
chr4 (18-240)||(31472568-31472805)
chr4 (149-240)||(31157122-31157213)
chr4 (143-238)||(31504216-31504311)
chr4 (18-129)||(31499199-31499310)
chr4 (18-127)||(31479154-31479263)
chr4 (76-124)||(31157034-31157082)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33057331 - 33057553
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057331 attattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 33057430  T
Q  118 actatttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttg 217  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057431 actatttgaatctcagaagaggaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttg 33057530  T
Q  218 gacagttgaaaatgagcaatcct 240  Q
    |||||||||||||||||||||||    
T  33057531 gacagttgaaaatgagcaatcct 33057553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33644795 - 33644561
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| ||||||||||   ||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||| |     
T  33644795 attattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttgatccaacttggtatttcacttcctggagtt 33644696  T
Q  118 actatttgaatctcataagagtaacgtgggt------------ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || |||||| ||  || | ||||   |||||            |||||| |||||||||| |||||||| ||| |||||||||||||||| |||||||||    
T  33644695 acaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctct 33644596  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||||| |||||||||||||| |||||||    
T  33644595 cacccaattttgaacagttgaaaatgaccaatcct 33644561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 33304240 - 33304471
Alignment:
Q  21 attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact 120  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||  |||| ||||||||||||| ||||||||||| |||||||| ||||     
T  33304240 attgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaaca 33304339  T
Q  121 atttgaatctcat--aag----------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac 208  Q
    |||||||||  ||  |||          || |  ||| |||||||| |||||||||| ||| |||| ||| ||||||||| |||||| ||||||||||||    
T  33304340 atttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcac 33304439  T
Q  209 ccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||||||||||||||||| |||||||    
T  33304440 ccaattttggacagttgaaaatgaacaatcct 33304471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33262379 - 33262613
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| ||| |||||| |||||||||   |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||    
T  33262379 attattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaacttggtatttcatttcctggacta 33262478  T
Q  118 actatttgaatctc------ataag------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| |||      |||||      || |  || ||| ||| | |||||||||| || ||||| ||| ||||||||| |||||| |||||||||    
T  33262479 acaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtcatgctactgcaacgttccctct 33262578  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  33262579 cacccaattttggacagttgaaaatgaccaatcct 33262613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9166514 - 9166739
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||||   ||||||||||||| |||  | |||  ||| |||||||||||||||||||||||||| |||||||  ||    
T  9166514 attattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttgatccaacttggtatttcaattcctggcgta 9166613  T
Q  118 actatttgaatctcataagagt---aacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaatt 214  Q
    || |||||||||  || | |||   |  |||||||||||| ||| |||||  |||||||| ||| ||||||||| |||||||||||| | |||| |||||    
T  9166614 acaatttgaatcctatcaaagtgggatggtgggtttgcctgaataaattgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaatt 9166713  T
Q  215 ttggacagttgaaaatgagcaatcct 240  Q
     ||||||||||||||||| |||||||    
T  9166714 ctggacagttgaaaatgaccaatcct 9166739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 33398828 - 33399041
Alignment:
Q  21 attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact 120  Q
    ||||| ||| |||||| ||  ||||||  |||||||| ||||||||| |||||  | ||||||||||||||||||||||||||||||||||||| ||||     
T  33398828 attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca 33398927  T
Q  121 atttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggac 220  Q
    ||||||       | | | |  |||| || |||  |||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||    
T  33398928 atttgag------aggtggattgtggattggccagaatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaac 33399021  T
Q  221 agttgaaaatgagcaatcct 240  Q
    |||||||||||| |||||||    
T  33399022 agttgaaaatgaccaatcct 33399041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 33271582 - 33271779
Alignment:
Q  52 tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcat---aagagtaacgtgggt 148  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | |  || |||| |||||   || |  |  | ||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaataagattgcgggt 33271681  T
Q  149 ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||| ||||||||||| |||||||| ||| ||||| ||| |||||| ||||||||||||      |||||||||||||||||||||||| |||||||    
T  33271682 ttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaatcct 33271779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33387907 - 33388141
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||  |   ||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | ||    
T  33387907 attattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagta 33388006  T
Q  118 actatttgaatc---tcataagagtaa---------cgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || |||||||||   ||| || ||  |          || ||||||||||||| |||||| |||||||| ||| ||||||||| ||||||   ||||| |    
T  33388007 acaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctat 33388106  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||| ||||||||||||||||| || |||||||    
T  33388107 cacccagttttggacagttgaaaacgatcaatcct 33388141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 33285347 - 33285458
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||||| | ||||||||||||||||  |||||  |||||||| || ||||||||||||||||||||||||||| ||    
T  33285347 attattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatccaacttggtatttcacttcctggagta 33285446  T
Q  118 actatttgaatc 129  Q
    || || ||||||    
T  33285447 acaatatgaatc 33285458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 33409865 - 33409959
Alignment:
Q  146 ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||| |||||| |||  ||||||| ||| ||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  33409865 ggtttgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct 33409959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 28870424 - 28870323
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| ||||||||   ||||||||||   ||||||| ||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  28870424 attattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaacttggtatttcacttcctggagta 28870325  T
Q  118 ac 119  Q
    ||    
T  28870324 ac 28870323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 33285501 - 33285581
Alignment:
Q  157 atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat 237  Q
    ||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||    
T  33285501 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 33285581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 31563045 - 31562983
Alignment:
Q  52 tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctgga 114  Q
    |||||||||||||||| |||||| || ||||||||||||||| | ||||||||||||||||||    
T  31563045 tctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctgga 31562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 31562935 - 31562839
Alignment:
Q  150 tgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||      ||||||| |||||||| ||||||| |||||||    
T  31562935 tgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcct 31562839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 28870274 - 28870198
Alignment:
Q  156 aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga 232  Q
    ||||||||||||||||||| ||| || |||||| |  ||| ||||||||||||| || |||||||||||||||||||    
T  28870274 aatgaattgtttcatccatgaaaatgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatga 28870198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 33409768 - 33409840
Alignment:
Q  55 attggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaa 127  Q
    |||| |||||||  |||||  ||||||||||||||||||||||||||||||||||||||| | || |||||||    
T  33409768 attgatattgaagcacccacgctctgattgttgatccaacttggtatttcacttcctggagttacaatttgaa 33409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 33358799 - 33358849
Alignment:
Q  156 aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctc 206  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  33358799 aatgaattgtttcatccatgaaagtgtcatgctactgcaacgttccctctc 33358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 33358714 - 33358755
Alignment:
Q  87 gatccaacttggtatttcacttcctggattaactatttgaat 128  Q
    |||||||||| | ||||||||||||||| |||||||||||||    
T  33358714 gatccaacttagcatttcacttcctggagtaactatttgaat 33358755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 17441114 - 17440901
Alignment:
Q  27 attgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttga 126  Q
    |||||||||| ||||||||||  ||||||||  |||||||| |||||  |||| |||||||||||||||||||||||| ||||||||| |||| || |||    
T  17441114 attgtcatgcttaataggagattggtctattcttattgaatcacccacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatga 17441015  T
Q  127 atctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttga 226  Q
    |||  ||   | ||    ||||||||||||||||||||  |||||||| ||| ||||||||| ||| ||  |||||||||||||||||||||||||||||    
T  17441014 atcctattcaaatagaaagggtttgccttaatgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttga 17440915  T
Q  227 aaatgagcaatcct 240  Q
    | |||| |||||||    
T  17440914 agatgaacaatcct 17440901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 397 - 631
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  397 attattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagta 496  T
Q  118 actatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| ||||||  | ||   ||         || ||||||||| ||||||||||||||||||| ||| ||| ||||| || |||  ||||||||    
T  497 acaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctct 596  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  597 cacccaattttggacagttgaaaatgaccaatcct 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 6143 - 6377
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  6143 attattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagta 6242  T
Q  118 actatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| ||||||  | ||   ||         || ||||||||| ||||||||||||||||||| ||| ||| ||||| || |||  ||||||||    
T  6243 acaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctct 6342  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  6343 cacccaattttggacagttgaaaatgaccaatcct 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 31148108 - 31148267
Alignment:
Q  76 ctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcataagagtaacgtgggtttgccttaatgaattgtttcatcc 172  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||   ||| | ||| |  ||||||| |||  ||||| |||| ||||||    
T  31148108 ctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatcagatgaggattgtgggttcgcccgaatgagttgtatcatcc 31148207  T
Q  173 ataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga 232  Q
    || ||| | |||||||  | |||  |||||||||||||||||| ||||||||||||||||    
T  31148208 atgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatga 31148267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 31479123 - 31479029
Alignment:
Q  146 ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||| |||||||||| |||||||| ||| ||||||||| || ||| ||||| | ||||||||||| |||||||||||||||| |||||||    
T  31479123 ggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct 31479029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 31472805 - 31472568
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||| |||||   ||||| | |||| |||| |||| |  |||||||||||| ||||||||||||||||||||||||| ||    
T  31472805 attattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttgaaccaacttggtatttcacttcctggagta 31472706  T
Q  118 actatttga---atctcataagagt---------aacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctg---caatgttccc 202  Q
    || || |||   || |||||| |||         |  |||| ||||||| ||||| |||| |||||||| ||| ||||||| |  ||   ||||||||||    
T  31472705 acaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccc 31472606  T
Q  203 tctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||| || ||||||||||||||||||||||||    
T  31472605 tctcacccaaattaggacagttgaaaatgagcaatcct 31472568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 31157122 - 31157213
Alignment:
Q  149 ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||| ||| |||||| |||||||| ||| || ||||||  |||||| ||| |||||||||||||| |||||||||||||||| |||||||    
T  31157122 ttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct 31157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 31504311 - 31504216
Alignment:
Q  143 gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatc 238  Q
    ||||||||||||||||||||||| |||||||| ||| |||||| ||  || |   |||||||||| ||||||| |||||||||||||| |||||||    
T  31504311 gtgggtttgccttaatgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaataagcaatc 31504216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 31499310 - 31499199
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||  |||| |||||   ||||||| ||||||||| |||| | |||||||| || | |||||||| |||||||||||||||| ||    
T  31499310 attattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagta 31499211  T
Q  118 actatttgaatc 129  Q
    || || ||||||    
T  31499210 acaatatgaatc 31499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 31479263 - 31479154
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||| ||| |||| |||||    |||||| ||||| ||| |||| | ||||||||||||| ||||||||| |||||||| |||||| ||    
T  31479263 attattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttgaaccaacttggcatttcactacctggagta 31479164  T
Q  118 actatttgaa 127  Q
    || |||||||    
T  31479163 acaatttgaa 31479154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31157034 - 31157082
Alignment:
Q  76 ctctgattgttgatccaacttggtatttcacttcctggattaactattt 124  Q
    ||||||||||||| |||| |||||||||||||||| ||| |||| ||||    
T  31157034 ctctgattgttgaaccaaattggtatttcacttccaggaataacaattt 31157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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