View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_3 (Length: 561)
Name: NF8452_low_3
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Complemental strand, 43316417 - 43315951
Alignment:
| Q |
15 |
tacttaagtcggtcatgagacttttattgatagaacatttaaaaggtgtgtggttgaaccccaacatattaaggcaaatgctaacaaagtatattgatta |
114 |
Q |
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| T |
43316417 |
tacttaagtcggtcagtagacttttattgattgaacatttaaaaggtatgtggttgaaccccaacatattaaggcaaatgctaacaaagtatattgatta |
43316318 |
T |
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| Q |
115 |
tgaaagtaaacatatggatatttannnnnnngaagttaggcaaactcatttcatttttatcaagaatcttaggagcaatacaatgaacagtgacacttta |
214 |
Q |
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| T |
43316317 |
tgaaagtaaacatatggatattt-tttttttgaagttaggcaaactcatttcatttttatcaagaatcttaggagcaatacaatgaacagtgacacttta |
43316219 |
T |
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| Q |
215 |
gtaagattgtaaacaattttatttgtcagcctacagataaaagctaacatgaatcatgatcatgatatattatgatcaatgtgaaatgctactaacacag |
314 |
Q |
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| T |
43316218 |
gtaagattgtaaacaattttatttgtctgcctgcagataaaagctaacatgaatcatgatcatgatatattatgatcaatgtgaaatgctactaacacag |
43316119 |
T |
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| Q |
315 |
tgatcaatatattatgatgctcnnnnnnnctttacctataaattctttcaatgcagaaaaatgcccctcgccaatcactgccacaattcaacgaatggat |
414 |
Q |
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| T |
43316118 |
tgatcaatatattatgatgctctttttttctttacctataaattctttcaatgcagaaaaatgcccctcgccaatcactgccacaattcaacgaatggat |
43316019 |
T |
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| Q |
415 |
taagaaggcgccaatgtcggacacttctatgtataattctaaaattg-aaaaacaagagatccgaaca |
481 |
Q |
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| T |
43316018 |
taagaaggcgccaatgtcggacacttctatgtataattctaaaattgaaaaaacaagagatccgaaca |
43315951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 269 - 466
Target Start/End: Complemental strand, 43322506 - 43322310
Alignment:
| Q |
269 |
catgatcatgatatattatgatcaatgtgaaatgctactaacacagtgatcaatatattatgatgctcnnnnnnnctttacctataaattctttcaatgc |
368 |
Q |
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| T |
43322506 |
catgatcatcatatattatgatcaatgtcaaatgctactaatacgaagatcaatatattatgatgctgtttttttc-ttacacataaatcattttaatgc |
43322408 |
T |
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| Q |
369 |
agaaaaatgcccctcgccaatcactgccacaattcaacgaatggattaagaaggcgccaatgtcggacacttctatgtataattctaaaattgaaaaa |
466 |
Q |
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| T |
43322407 |
agaaaaatgccccataccaatcactgccacagtttgagaaatggattcagaagccaccattttctgacagttcaatgtataattctaaaattaaaaaa |
43322310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 418
Target Start/End: Complemental strand, 43331494 - 43331358
Alignment:
| Q |
279 |
atatattatgatcaatgtgaaatgctactaacacagtgatcaatatattatgatgctcnnnnnnnctttacctataaattctttcaatgcagaaaaatgc |
378 |
Q |
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| T |
43331494 |
atatattatgttccatgtgaaatgccactaacatggagatcaatatattatgatgctctatatc---ttacctataaatcattttaatgcagaaaaatgc |
43331398 |
T |
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| Q |
379 |
ccctcgccaatcactgccacaattcaacgaatggattaag |
418 |
Q |
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| T |
43331397 |
cccatatcaatcactccctcaattcgagcaatggattaag |
43331358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 43331576 - 43331523
Alignment:
| Q |
188 |
agcaatacaatgaacagtgacactttagtaagattgtaaacaattttatttgtc |
241 |
Q |
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| T |
43331576 |
agcaatgcaatgaggagtgacgctctagtaagattgtaaacaattttatttgtc |
43331523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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