View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8452_low_5 (Length: 417)
Name: NF8452_low_5
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_5 |
 | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold1344 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0854 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 400
Target Start/End: Complemental strand, 4815 - 4438
Alignment:
| Q |
23 |
acttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacgatgtccgcgat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || || ||||| |
|
|
| T |
4815 |
acttgaagaattgtacatcttgaatagtttcattgattcttgtaaggaaataaccttaccaacattgcaaaggtatcatctcagcagctatttctgcgat |
4716 |
T |
|
| Q |
123 |
tatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatggaaacaacagagc |
222 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715 |
tatgattatatgatgaaagatacaatatcaagatgtgtgtctttgaaatgggattatttctcagaagcaacattaaagtatgtgatggaaacaacagagc |
4616 |
T |
|
| Q |
223 |
ttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaacttgttttgaa |
322 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4615 |
ttcttcatttggaaggaaccgacaagggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatctaattaaacttgttttgaa |
4516 |
T |
|
| Q |
323 |
aaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaagttggt |
400 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4515 |
aaaacttcatcaagtacagtacctggtagacacgaaacataataattctgaagtaccaagtgtcttctccaagttggt |
4438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 18723764 - 18723392
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacgatgtccg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
18723764 |
catcacttgaagaattgtacttcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtatcgtctca---acgatgtcac |
18723668 |
T |
|
| Q |
119 |
cgattatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatggaaacaaca |
218 |
Q |
| |
|
|| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18723667 |
cgtttatcattataagatgaaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacatttaagtatgtgatggaaacaaca |
18723568 |
T |
|
| Q |
219 |
gagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaacttgttt |
318 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18723567 |
gagcttcttcatttggaaggaaccgacaagggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatctaattaaactttatt |
18723468 |
T |
|
| Q |
319 |
tgaaaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaa |
394 |
Q |
| |
|
|| | |||| | ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
18723467 |
tggacaattgtgatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgtcttctccaa |
18723392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 27369956 - 27370341
Alignment:
| Q |
12 |
agatggacatcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacg |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
27369956 |
agatgcacatcacttgaagaattgtacttcatgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattttctca---aag |
27370052 |
T |
|
| Q |
112 |
atgtccgcgattatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatgga |
211 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
27370053 |
atgtcaccggttatgcttatatgatgaaatatacaatatcaagaggtgtgtcttttgaatgggattatttatcagaagcaacatttaagtatgtgatgga |
27370152 |
T |
|
| Q |
212 |
aacaacagagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaa |
311 |
Q |
| |
|
|||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
27370153 |
aacagcagaggttcttcatttgaaaggaaccaacaagggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgag |
27370252 |
T |
|
| Q |
312 |
cttgttttgaaaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaagttggt |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27370253 |
cttgttttgaaaaattgtcatcaagtacaatgcctggtagacacgaaacataataattctgaagtaccaagtgtcttctccaagttggt |
27370341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 27343665 - 27344037
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacgatgtccg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
27343665 |
catcacttgaagaattgtacttcttggatagtttcaatggtttttgtaaggaaataaccttaccaacattgcaaaggtatcgtctcagc---gatgtctc |
27343761 |
T |
|
| Q |
119 |
cgattatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatggaaacaaca |
218 |
Q |
| |
|
| |||||| ||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
27343762 |
ctattatcattataggatgaaagatccaatatcaagaggtgtgtttttgaaatgggattatttctcagaagcaacattgaagtttgtgatggaaacagca |
27343861 |
T |
|
| Q |
219 |
gagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaacttgttt |
318 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
27343862 |
gagcttcttcatttggaaggaaccgacaagggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatctaattgatcttgttt |
27343961 |
T |
|
| Q |
319 |
tgaaaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaa |
394 |
Q |
| |
|
|| |||||| ||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
27343962 |
tggaaaattgtcatcaaatacagtgcctggtagacactaaacatataaaatctaaagtaccaagtgtcttctccaa |
27344037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 400
Target Start/End: Complemental strand, 26117430 - 26117277
Alignment:
| Q |
247 |
agggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaactt-gttttgaaaaattttcatcaagtacagtgcc |
345 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||| | ||| |||| | | || ||||| ||| ||||||||| |
|
|
| T |
26117430 |
agggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttca-caactacagtgcc |
26117332 |
T |
|
| Q |
346 |
tggtagacacgaaacataataattctaaagtaccaagtgtcttctccaagttggt |
400 |
Q |
| |
|
| |||||||| ||||||| ||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
26117331 |
ttgtagacactaaacatattaattctcaagtaccaattgttttctccaagttggt |
26117277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 400
Target Start/End: Complemental strand, 26239694 - 26239541
Alignment:
| Q |
247 |
agggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaacttgttttgaaa-aattttcatcaagtacagtgcc |
345 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||||| ||| | ||||| || ||||| ||| |||||| || |
|
|
| T |
26239694 |
agggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttca-caactacagtacc |
26239596 |
T |
|
| Q |
346 |
tggtagacacgaaacataataattctaaagtaccaagtgtcttctccaagttggt |
400 |
Q |
| |
|
| |||||||| ||||||| ||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
26239595 |
ttgtagacactaaacatattaattctcaagtaccaattgttttctccaagttggt |
26239541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 400
Target Start/End: Complemental strand, 26145503 - 26145281
Alignment:
| Q |
175 |
attatttctcagaagcaacattaaagtatgtgatggaaacaacagagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggat |
274 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||| ||||| | || | |||||||| || |||||| |||||||||||||| ||| |
|
|
| T |
26145503 |
attatttctcagaagcaacatttaagtatttgatgcaaacatcagagtattttatgttggaaggaattaa---gggatgtagaaatctcatgcccgagat |
26145407 |
T |
|
| Q |
275 |
tgttcctatagataatggtatgaatgatctaattaaacttgttttga-aaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaa |
373 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| | ||| | ||| | || ||||| ||| |||||||||| |||||||| ||||||| ||||||| | |
|
|
| T |
26145406 |
ggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttca-caactacagtgcctagtagacactaaacatattaattctca |
26145308 |
T |
|
| Q |
374 |
agtaccaagtgtcttctccaagttggt |
400 |
Q |
| |
|
|||||||| ||| ||||| |||||||| |
|
|
| T |
26145307 |
agtaccaattgttttctctaagttggt |
26145281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 400
Target Start/End: Complemental strand, 18081488 - 18081266
Alignment:
| Q |
178 |
atttctcagaagcaacattaaagtatgtgatggaaacaacagagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgt |
277 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||| ||| || ||||||||||| | |||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
18081488 |
atttcacagaagcaacatttaagcatgtgatgcaaaaaatagagcttcttcggttggaaagagttaagaagggatggagaaatctcatgccagaaattgt |
18081389 |
T |
|
| Q |
278 |
tcctatagataatggtatgaatgatctaattaaacttgttttgaaaaat-tttcatcaagtacagtgcctggtagacacgaaacataataattctaaagt |
376 |
Q |
| |
|
|||||||||| | |||||||||||||||||| | ||| ||||||| || |||| ||| |||||| ||| || ||| |||||| | ||||| |||| |
|
|
| T |
18081388 |
tcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattca-caactacagtacctcatatacattgaacatattgattctcaagt |
18081290 |
T |
|
| Q |
377 |
accaagtgtcttctccaagttggt |
400 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
18081289 |
accaactgtcttctccaagttggt |
18081266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 26184087 - 26184008
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtat |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| | |||||||| |||||||||||||| | |||| |||||||| |
|
|
| T |
26184087 |
catcacttgaagaattgtacttcttgaagagtttcaataaatcttgtaaagaaataaccttacctagattggaaaggtat |
26184008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 26212694 - 26212615
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtat |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| | |||||||| |||||||||||||| | |||| |||||||| |
|
|
| T |
26212694 |
catcacttgaagaattgtacttcttgaagagtttcaataaatcttgtaaagaaataaccttacctagattggaaaggtat |
26212615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 26145647 - 26145568
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtat |
98 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
26145647 |
catcacttgaagaattgtacttcagtcatagtttcaatgatttttgtcaggaaataaccttacctacattggaaaggtat |
26145568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 26239907 - 26239821
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctca |
105 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
26239907 |
catcacttgaagaattgtactttagttatagtttcaatgagttttgtaaggaaataaccttacctacattggaaaggtattttctca |
26239821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 26117635 - 26117557
Alignment:
| Q |
27 |
gaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctca |
105 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||| |||| |||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
26117635 |
gaagaattgtacttctgtcacagtttcaatgatttttgtcaggaaataaccttacctacattggaaaggtattttctca |
26117557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 18031600 - 18031545
Alignment:
| Q |
249 |
ggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatct |
304 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
18031600 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
18031545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 18081642 - 18081556
Alignment:
| Q |
12 |
agatggacatcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtat |
98 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||| || ||| |||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
18081642 |
agatgcacatcacttgaagaattgtacttctgtcatagttttaacaatttttgtcaggaaataaccttacctgcattggaaaggtat |
18081556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 28492553 - 28492496
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28492553 |
gggatggagaaatatgatgcctgagattgttcctatggatcatggtatgaatgatcta |
28492496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 27401545 - 27401490
Alignment:
| Q |
249 |
ggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatct |
304 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||| ||||| ||||||||||| |
|
|
| T |
27401545 |
ggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatct |
27401490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 26624397 - 26624435
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctataga |
286 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26624397 |
gggatggagaaatctcatgcctgagattgttcctataga |
26624435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 27464560 - 27464503
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
27464560 |
gggatggagaaacatcatacctgagattgttcctatggatcatggtatgaatgatcta |
27464503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 27962782 - 27962839
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
27962782 |
gggatggagaaatatcatacctgagattgttcctatggagcatggtatgaatgatcta |
27962839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 28472512 - 28472455
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
28472512 |
gggatggagaaatatgatgcctgagattgttcctatggaccatggtatgaatgatcta |
28472455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 73595 - 73216
Alignment:
| Q |
12 |
agatggacatcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacg |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |
|
|
| T |
73595 |
agatgcacatcacttgaagaattgtacttcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaagatattgtctcagc---g |
73499 |
T |
|
| Q |
112 |
atgtccgcgattatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatgga |
211 |
Q |
| |
|
|| | ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
73498 |
ataacaccgattatgcttataagatgaaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacatttaagtatttgatgga |
73399 |
T |
|
| Q |
212 |
aacaacagagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaa |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
73398 |
aacaacagagcttcttcatttggaaggaatcgacaagggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatctaattaaa |
73299 |
T |
|
| Q |
312 |
cttgttttgaaaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaa |
394 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
73298 |
ctttatttgagaaattgtcatcaagtacagtgcctggtagacactaaacatataaattctcaagtaccaagtgtcttctccaa |
73216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 352 - 724
Alignment:
| Q |
19 |
catcacttgaagaattgtacatcttgaatagtttcaatgattcttgtaaggaaataaccttaccaacattgcaaaggtattatctcagcaacgatgtccg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
352 |
catcacttgaagaattgtacttcttgaatagtttcaatgatttttgtaaggaaataaccttaccaacattgcaaaggtatcatctcagcaa---tgtcgc |
448 |
T |
|
| Q |
119 |
cgattatctttatatgatggaagatacaatatcaagaggtgtgtctttgacatgggattatttctcagaagcaacattaaagtatgtgatggaaacaaca |
218 |
Q |
| |
|
|| ||||| ||||| | || | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| || |
|
|
| T |
449 |
cggttatcgttatagggtgaatgatacaatatcaagaggtgtgtctttgagatgggattatttctcagaagccacattgaagtatgtgatgaaaactgca |
548 |
T |
|
| Q |
219 |
gagcttcttcattcggaaggaaccaacaagggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatctaattaaacttgttt |
318 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
549 |
gagcatcttcatttggaaggaaccgacaagggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatctaattgaactttctt |
648 |
T |
|
| Q |
319 |
tgaaaaattttcatcaagtacagtgcctggtagacacgaaacataataattctaaagtaccaagtgtcttctccaa |
394 |
Q |
| |
|
|| ||| | |||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
649 |
tggaaacatgtcatcaagtacagtgccttttagacactaaacatataaattctgaagtaccaagtgtcttctccaa |
724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 8694883 - 8694826
Alignment:
| Q |
248 |
gggatggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
8694883 |
gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta |
8694826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 26027399 - 26027346
Alignment:
| Q |
252 |
tggagaaatctcatgcctaggattgttcctatagataatggtatgaatgatcta |
305 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
26027399 |
tggagaaatatcatgcctgagattgttcatatggatcatggtatgaatgatcta |
26027346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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