View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_8 (Length: 326)
Name: NF8452_low_8
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 5689733 - 5689443
Alignment:
| Q |
13 |
aacctgtgagaaaatccaatagatatgaattcctacatagaaatccagaggagnnnnnnnngattatgnnnnnnnnnnnnnnnnnaaaaaatgaaagacc |
112 |
Q |
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| T |
5689733 |
aacctgtgagaaaatccaatagatatgaattcctacatagaaatccagaggagaaaaaaaagattatgagtagtagtag-------aaaaatgaaagacc |
5689641 |
T |
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| Q |
113 |
tgattatttttggcgcatgagaccaatggaagaaggagaaggaataggcatgtcattgaaacgttgttcattgccatagtgtacttgaatctctaaccaa |
212 |
Q |
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| T |
5689640 |
tgattatttttggtgcatgagaccaatggaagaaggagaaggaataggcatgtcattgaaacgttgttcattgccatagtgtacttgaatctctaaccaa |
5689541 |
T |
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| Q |
213 |
tgcttatgcttgccctcatctctagagtataacgacaagattttattttataggcatgctattggataggtctttctgtattatttggacactttttg |
310 |
Q |
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| T |
5689540 |
tgcttatgcttgccctcatctctagagtataacgacaagattttattttataggcatgctattggataggtctttctgtattatttggacactttttg |
5689443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 5680304 - 5680248
Alignment:
| Q |
99 |
aaaaatgaaagacctgattatttttggcgcatgagaccaatggaagaaggagaagga |
155 |
Q |
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|||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |
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| T |
5680304 |
aaaaatgaaagacctgattattattggtgcatgacaccaatggaagaaggagcagga |
5680248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 5680074 - 5680038
Alignment:
| Q |
257 |
attttataggcatgctattggataggtctttctgtat |
293 |
Q |
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| T |
5680074 |
attttataggcatgctattggacatgtctttctgtat |
5680038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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