View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_9 (Length: 324)
Name: NF8452_low_9
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4610610 - 4610710
Alignment:
| Q |
18 |
agatgaagaatcatggaattcttgacatttttagttgtcacagtattggagaaatttgagaggaaactaaagatgtaatgatgttagttagtgctttgga |
117 |
Q |
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| T |
4610610 |
agatgaagaatcatggaattcttgacatttttagttgtcacagtattggagaaatttgagaggaaactaaagatgtaatgatgttagttagtgctttgga |
4610709 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
4610710 |
a |
4610710 |
T |
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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 4610796 - 4610895
Alignment:
| Q |
204 |
gtaaccaagtggtttacatctagtaaagaatttggtttggtttcttttaaagaatacaactctgtactcatagcaattgttatcagtaccttacgataca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4610796 |
gtaaccaagtggtttacatctagtaaagaatttggtttggtttcttttaaagaatacaactctgtactcatagcaattgttatcagtaccttacgataca |
4610895 |
T |
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