View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8453_high_2 (Length: 263)
Name: NF8453_high_2
Description: NF8453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8453_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 1749161 - 1749408
Alignment:
| Q |
8 |
ttgaatattcttctactactatttgtatccaatatgtgactaaccaccactcatacttaaattccaatataaagaagaaattagatgattatctagatac |
107 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1749161 |
ttgaatattctactacatctatttgtatccaatatgtgactaaccaccactcatacttaaattcgaatataaagaagaaattagatgattatctagatac |
1749260 |
T |
|
| Q |
108 |
aaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgttcattgcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1749261 |
aaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgttcattgcc |
1749360 |
T |
|
| Q |
208 |
attttgagaaccttcaacagcatgcaaatctacaatcactttcatctc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1749361 |
attttgagaaccttcaacagcatgcaaatctacaatcactttcatctc |
1749408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 1717935 - 1718087
Alignment:
| Q |
101 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| || || |||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
1717935 |
tagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgct |
1718034 |
T |
|
| Q |
201 |
cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatc |
253 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1718035 |
caaaaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatc |
1718087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 1754877 - 1755021
Alignment:
| Q |
109 |
aaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgttcattgcca |
208 |
Q |
| |
|
|||||||| ||||| |||||| || |||| ||||||||||||||||| || |||||||||||| || ||||||||||||||||||| || ||||| ||| |
|
|
| T |
1754877 |
aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattacca |
1754976 |
T |
|
| Q |
209 |
ttttgagaaccttcaacagcatgcaaatctacaatcactttcatc |
253 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
1754977 |
ttttgagaaccttcaactgcatgcaagtccacaatcactttcatc |
1755021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 1739405 - 1739557
Alignment:
| Q |
101 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
200 |
Q |
| |
|
|||||||| ||||||| ||||||||| || || |||| |||||||| || ||||| |||||| ||||||||||||||||||||||||| |||||||| | |
|
|
| T |
1739405 |
tagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactatgct |
1739504 |
T |
|
| Q |
201 |
cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatc |
253 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
1739505 |
caaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatc |
1739557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University