View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8453_low_2 (Length: 317)
Name: NF8453_low_2
Description: NF8453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8453_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 32703932 - 32704118
Alignment:
| Q |
19 |
atcaaagataatcgaaactgaaaccttaaagttttatttcaaatctatttgtttaaatattacaaaaaatgaaacactatgaaaattatttttgaaaaat |
118 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32703932 |
atcaaagataatcgaaattaaaaccttaaagttttatttcaaatctatttgtttaaaaat----aaaactgaaacactatgaaaattatttttgaaaaat |
32704027 |
T |
|
| Q |
119 |
tgtaactgaccggcccttaatttgatgtgataatg----atactggtacataagaatctcctaaagcgttgacaataaacactttattaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704028 |
tgtaactgaccggcccttaatttgatgtgataatatataatactggtacataagaatctcctaaagcgttgacaataaacactttattaat |
32704118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 32704160 - 32704254
Alignment:
| Q |
206 |
gtatgtatagatagatttgattcctggctttctaccacaagagggtatctgaatagagtcatctcaggatcatgaaaaataatatcatgggatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704160 |
gtatgtatagatagatttgattcctggctttctaccacaagagggtatcagaatagagtcatctcaggatcatgaaaaataatatcatgggatgt |
32704254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University