View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_high_3 (Length: 377)
Name: NF8454_high_3
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_high_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 32372072 - 32371710
Alignment:
| Q |
15 |
aaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtatcacacagagatttaagagaaacacaaagactagagattaga |
114 |
Q |
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| T |
32372072 |
aaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtgtcacacagagatgtaagagaaacacaaagactagagattaga |
32371973 |
T |
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| Q |
115 |
gaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagnnnnnnnttcgaactccataatcgtgagct |
214 |
Q |
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| T |
32371972 |
gaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagaaaaaaattcgaactccataatcgtgagtt |
32371873 |
T |
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| Q |
215 |
tttctcgcatctgtccagaaaacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcgagtt |
314 |
Q |
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| T |
32371872 |
tttctcgcatctgtccagaaaacgaatatgttcgtgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcaagct |
32371773 |
T |
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| Q |
315 |
ttccaaccatgatataaatacaattccaaacagtatttatttattcatgaattgcagcaattc |
377 |
Q |
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| T |
32371772 |
ttttaaccatgatataaatacaattccaaacagtatttatttattcatgaattgcagcaattc |
32371710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 32364989 - 32365125
Alignment:
| Q |
235 |
aacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcgagttttccaaccatgatataaata |
334 |
Q |
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| T |
32364989 |
aacgattatgttcgcgagtcaacttgtatgggtagctggactcgtaaacttggccaactctacgagctgacttgcgagtttgctaaccatgatataaata |
32365088 |
T |
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| Q |
335 |
caattccaaac--agtatttatttattcatgaattgca |
370 |
Q |
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| T |
32365089 |
caattccagacagagtattta-ttattcatgaattgca |
32365125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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