View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_1 (Length: 544)
Name: NF8454_low_1
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_1 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 16975904 - 16976159
Alignment:
| Q |
18 |
gaatctaacatggagtttgattagctatgcgtgaagactgaagagcaagtatatgatttattggatttttgttgttcgtttcaatttagtttattagtgt |
117 |
Q |
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| T |
16975904 |
gaatctaacatggagtttgattagctatgcgtgaagactgaagagcaagtatatgatttattggatatttgttgttcgtttcaatttagtttattagtgt |
16976003 |
T |
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| Q |
118 |
gagtattttgctcttttcttattgagtgttttttcatttggttcggtttgatatatccatataataagagattgcattgtattttgtactgaggaatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
16976004 |
gagtattttgctcttttcttattgagtgttttttcatttggttcggtttgatatatccatat--taagagattgcattgaattttgtactgaggaatcta |
16976101 |
T |
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| Q |
218 |
attaattattgtttggtttcttaaccaaaacaaaaaggatttatagataacactcatg |
275 |
Q |
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| T |
16976102 |
attaattattgtttggtttcttaaacaaaacaaaaaggatttatagataacactcatg |
16976159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 277 - 386
Target Start/End: Original strand, 16977185 - 16977294
Alignment:
| Q |
277 |
gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttggctgcaat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
16977185 |
gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttagttgcaat |
16977284 |
T |
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| Q |
377 |
ccttctcaaa |
386 |
Q |
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|||||||||| |
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| T |
16977285 |
ccttctcaaa |
16977294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 538
Target Start/End: Complemental strand, 16580917 - 16580850
Alignment:
| Q |
471 |
atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaa |
538 |
Q |
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| T |
16580917 |
atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaa |
16580850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 538
Target Start/End: Original strand, 16614463 - 16614530
Alignment:
| Q |
471 |
atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaa |
538 |
Q |
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| T |
16614463 |
atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaa |
16614530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 16572889 - 16572829
Alignment:
| Q |
478 |
tgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaa |
538 |
Q |
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|||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||| ||||| |
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| T |
16572889 |
tgtagctctttcattactcttagcaaggatggataatttctcagtcaactcgaacgccaaa |
16572829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 538
Target Start/End: Complemental strand, 16874778 - 16874711
Alignment:
| Q |
471 |
atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaa |
538 |
Q |
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|||||| |||||||||| ||||| ||| |||||||| ||||||||||| ||||| |||||| ||||| |
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| T |
16874778 |
atgcttctgtagctctttcattactcttagcaaggatggataatttctcagtcaattcgaacgccaaa |
16874711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 16991733 - 16991778
Alignment:
| Q |
298 |
aatatctgtcctgtttttatcgcatctacttccttctcgcctatac |
343 |
Q |
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| T |
16991733 |
aatatctgtcttgtttttatcgcataaacttccttctcacctatac |
16991778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 233287 - 233342
Alignment:
| Q |
472 |
tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaact |
527 |
Q |
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||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
233287 |
tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaact |
233342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 7392208 - 7392153
Alignment:
| Q |
472 |
tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaact |
527 |
Q |
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||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
7392208 |
tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaact |
7392153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 48298403 - 48298458
Alignment:
| Q |
472 |
tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaact |
527 |
Q |
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||||| || ||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
48298403 |
tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaact |
48298458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 10838 - 10874
Alignment:
| Q |
496 |
ctctgcaaggatagataatttctcggtcaactcgaac |
532 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |
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| T |
10838 |
ctctgcaaggatagataatttctcagtcaacttgaac |
10874 |
T |
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