View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_2 (Length: 410)
Name: NF8454_low_2
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 45390576 - 45390312
Alignment:
| Q |
10 |
attattcttggagaatcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaa |
109 |
Q |
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| T |
45390576 |
attattcttggagaatcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaa |
45390477 |
T |
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| Q |
110 |
agtagatgggtttcaaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaaataaggaaagtcagttctgttcacaattagaaggacgaa |
209 |
Q |
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| T |
45390476 |
agtagatgggtttcgaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaattaaggaaagtcagttctgttcacaattagaaggacgaa |
45390377 |
T |
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| Q |
210 |
atttgaacatgtgtttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
275 |
Q |
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| T |
45390376 |
atttgaacatgtg-ttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
45390312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 45375419 - 45375155
Alignment:
| Q |
11 |
ttattcttggagaatcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaa |
110 |
Q |
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| T |
45375419 |
ttatttttggagaatcagctccagaccatgtatcttgtgattcactttggcaatgagcaaaacatgaatttataaacattcccccgctgtttgaataaaa |
45375320 |
T |
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| Q |
111 |
gtagatgggtttcaaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaaataaggaaagtcagttctgttcacaattagaaggacgaaa |
210 |
Q |
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| T |
45375319 |
gtagaagggtttcaaagcagcaatcatgctgagcctaaaacctgagtaaagtgcattgaattaaggaaagtcagttctattcacagttaagaggatgaaa |
45375220 |
T |
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| Q |
211 |
tttgaacatgtgtttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
275 |
Q |
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| T |
45375219 |
tttgaagatgtgtatggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
45375155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 45375095 - 45375036
Alignment:
| Q |
335 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg |
394 |
Q |
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| T |
45375095 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg |
45375036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 45390253 - 45390194
Alignment:
| Q |
335 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg |
394 |
Q |
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| T |
45390253 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg |
45390194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 39018255 - 39017999
Alignment:
| Q |
11 |
ttattcttggagaatcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaa |
110 |
Q |
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|||||||||||||| || || || ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| | ||||||||| |
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| T |
39018255 |
ttattcttggagaaccaacttcaaaccatgtatcttgcgattcactttggcaatgggcaaaacatgaatttataaacaccccccctctatctgaataaaa |
39018156 |
T |
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| Q |
111 |
gtagatgggtttcaaagctgcaatcatgctgagcctaaaacctgagtaaagtgcat---tgaaataaggaaagtcagttctgttcacaattagaaggacg |
207 |
Q |
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| T |
39018155 |
gtagaaaggtttcaaagctgcaataatgctgaacctaaaacctgagtgaagtgcattactgaattaaggaaagtaagttctattcacaattagaaggatg |
39018056 |
T |
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| Q |
208 |
aaatttgaacatgtgtttggagtaaactacttaattctttgacaaaagatactaaca |
264 |
Q |
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| T |
39018055 |
aaatttgaacatgtgtatggagtaaactacttaattctttgacaaaagatactaaca |
39017999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 39017922 - 39017862
Alignment:
| Q |
335 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatga |
395 |
Q |
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| T |
39017922 |
tgatggctgaacaattgaaagagggaccttgcaatgtattaatttcggctggtgtgcatga |
39017862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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