View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_4 (Length: 305)
Name: NF8454_low_4
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 54692793 - 54693077
Alignment:
| Q |
9 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
108 |
Q |
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| T |
54692793 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
54692892 |
T |
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| Q |
109 |
ttgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
208 |
Q |
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| T |
54692893 |
ttgtagacaagatgttataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
54692992 |
T |
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| Q |
209 |
tctttgcctctgctgtgagctccaatccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatcttt |
305 |
Q |
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| T |
54692993 |
tctttgc------------caccaatccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatcttt |
54693077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 54700152 - 54700438
Alignment:
| Q |
10 |
gagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtt |
109 |
Q |
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| T |
54700152 |
gagataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtt |
54700246 |
T |
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| Q |
110 |
tgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaattt |
209 |
Q |
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| T |
54700247 |
tgtagataagatgttgctatgtttggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacctt----tcttgatgtcatgaattt |
54700342 |
T |
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| Q |
210 |
ctttgcctctgctgtgagctccaatccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatcttt |
305 |
Q |
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| T |
54700343 |
cttagcctctgcagtgagctccaatccatctccccttcttcttatgatggattgaagttcccttgtacattcttttgtatgcagtaaagcatcttt |
54700438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 54688444 - 54688505
Alignment:
| Q |
244 |
cttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatcttt |
305 |
Q |
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| T |
54688444 |
cttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatcttt |
54688505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 54688230 - 54688379
Alignment:
| Q |
33 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
132 |
Q |
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| T |
54688230 |
aaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttt |
54688324 |
T |
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| Q |
133 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
187 |
Q |
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| T |
54688325 |
tggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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