View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_5 (Length: 268)
Name: NF8454_low_5
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_5 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 7840427 - 7840570
Alignment:
| Q |
45 |
actcttctctcttgtcaaccagctagatgttcctcccaagtgttagatatttatttagtagcggtcttggacactattcacattatttggtgggcaagga |
144 |
Q |
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| T |
7840427 |
actcttctctcttgtcaaccagctagatgttcctcccaagtgttagatatttatttagtagcggtcttgcacactattcacattatttggtgggcaagga |
7840526 |
T |
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| Q |
145 |
attctttgaggttctcaaatgcctactgtacattcagctaaggt |
188 |
Q |
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| T |
7840527 |
attctttgaggttctcaaatgcctattgtacattcagctaaggt |
7840570 |
T |
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Target: scaffold0134 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 1578 - 1786
Alignment:
| Q |
44 |
cactcttctctcttgtcaaccagctagatgttcctcccaagtgttagatatttatttagtagcggtcttggacactattcacattatttggtgggcaagg |
143 |
Q |
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| T |
1578 |
cactctcctatcttgtcggccagctcgatgctcatcccaagtgttggagatttacttagcagcggt-ttacacactatccacactatttggtgggcacgg |
1676 |
T |
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| Q |
144 |
aattctttgaggttctcaaatg-----cctactgtacattcagctaaggtccgtatacactcatttatagcaatctcagaaaatgtttctaagggtaaca |
238 |
Q |
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| T |
1677 |
aactctttgaggttctcagatgtactaccttctatacattcagccaaggttcgtattcactctcttattgcaatgtcaggaaatgtttcaaagggtcaca |
1776 |
T |
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| Q |
239 |
gtttaccttc |
248 |
Q |
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| T |
1777 |
gcttaccttc |
1786 |
T |
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