View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_6 (Length: 227)
Name: NF8454_low_6
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_6 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 25816152 - 25816350
Alignment:
| Q |
19 |
tcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgcaaggaagtaggcataggttcacgttacaaatgcag |
118 |
Q |
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| T |
25816152 |
tcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggttgcaacgaagtaggcataggttcacgttacaaatgcag |
25816251 |
T |
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| Q |
119 |
catttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaaacccaacacgaaac |
217 |
Q |
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| T |
25816252 |
catttgtgacaatgaccttcacacacactgcacaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaaacccaccaggaaac |
25816350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 25802059 - 25802239
Alignment:
| Q |
19 |
tcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgcaaggaagtaggcataggttcacgttacaaatgcag |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
25802059 |
tcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaataggcataggttcacgttacaaatgcag |
25802158 |
T |
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| Q |
119 |
catttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcacctt |
199 |
Q |
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| T |
25802159 |
catctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaatgcacctt |
25802239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 112472 - 112288
Alignment:
| Q |
19 |
tcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgcaaggaagtaggcataggttcacgttacaaatgcag |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||| |
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| T |
112472 |
tcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgatggctgcaaagaaataggcatcgattcacgttaaaaatgcag |
112373 |
T |
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| Q |
119 |
catttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaa |
203 |
Q |
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| T |
112372 |
catctgcgactacgaccttcatacacactgcgcaataccttccaccacactcttcgatccattttacacaaaatgcaccttccaa |
112288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 12530551 - 12530663
Alignment:
| Q |
29 |
aaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgcaaggaagtaggcataggttcacgttacaaatgcagcatttgtgac |
128 |
Q |
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|||||| ||||||| ||| ||||| ||| |||||||||||||| || |||||||| ||| | ||||||||||| ||||||| |||| |||||||||| |
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| T |
12530551 |
aaaacataaactaacatttcaacactccgagtttccattcaaatgtgatggctgcaaagaaattggcataggttcgcgttacagctgcaacatttgtgac |
12530650 |
T |
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| Q |
129 |
tatgaccttcaca |
141 |
Q |
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||||| ||||||| |
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| T |
12530651 |
tatgatcttcaca |
12530663 |
T |
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