View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8454_low_7 (Length: 218)
Name: NF8454_low_7
Description: NF8454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8454_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 54693078 - 54693273
Alignment:
| Q |
1 |
aattagctgcactgcacacatctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgag |
100 |
Q |
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| T |
54693078 |
aattagctgcactgcacacatctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgag |
54693177 |
T |
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| Q |
101 |
tgagtgagtggaagctgaattaaattttcaacacactcgaccaaatctcgcaagcctccaatcttatggtgaagcaatgacgaagaggtttcattggaag |
200 |
Q |
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| T |
54693178 |
tgagtga----aagctgaattaaattttcaacacactcgaccaaatctcgcaagcctccaatcttatggtgaagcaatgacgaggaggtttcattggaag |
54693273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 54700440 - 54700593
Alignment:
| Q |
6 |
gctgcactgcacacatctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagt |
105 |
Q |
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| T |
54700440 |
gctgcgctacacacatctaatagccttaaggatccatccaagaggttatttacccaattttcttgatgctcatggagaag----tgcatct----tgagt |
54700531 |
T |
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| Q |
106 |
gagtggaagctgaattaaattttcaacacactcgaccaaatctcgcaagcctccaatcttat |
167 |
Q |
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| T |
54700532 |
gagtggaagctgaatcaatttttcaacacactcaatcaaatctcgcaagcctccaattttat |
54700593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 54688504 - 54688580
Alignment:
| Q |
3 |
ttagctgcactgcacacatctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatg |
79 |
Q |
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| T |
54688504 |
ttagctgcactacacacatctaatagccttaaggaaccatccaaaaggttatttaccccattttcttgatgctcatg |
54688580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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