View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8455_high_3 (Length: 520)

Name: NF8455_high_3
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8455_high_3
NF8455_high_3
[»] chr3 (6 HSPs)
chr3 (283-500)||(55156740-55156957)
chr3 (283-464)||(54573461-54573639)
chr3 (89-196)||(55156546-55156653)
chr3 (89-196)||(54573279-54573386)
chr3 (15-54)||(54573205-54573244)
chr3 (15-54)||(55156472-55156511)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 283 - 500
Target Start/End: Original strand, 55156740 - 55156957
Alignment:
Q  283 gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttatcattcaaattat 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156740 gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttatcattcaaattat 55156839  T
Q  383 tttatcccaactatttttgcttcatttgagaatataataaatagaattaaattcactttcactacaaattcatattctcatttatctttcnnnnnnnnag 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  55156840 tttatcccaactatttttgcttcatttgagaatataataaatagaattaaattcactttcactacaaattcatattctcatttatctttcttttttttag 55156939  T
Q  483 aattggagaaggaaactg 500  Q
    ||||||||||||||||||    
T  55156940 aattggagaaggaaactg 55156957  T

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Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 283 - 464
Target Start/End: Original strand, 54573461 - 54573639
Alignment:
Q  283 gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttatcattcaaattat 382  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  54573461 gatagtgtgtgaaattctgatatttttagtgtctatgcataagagaatatgtttcatctctcaacagtcacatatctcaccattttactattcaaattat 54573560  T
Q  383 tttatcccaactatttttgcttcatttgagaatataataaatagaattaaattcactttcactacaaattcatattctcatt 464  Q
    |||| || |||||||| ||||||||||||||||   ||| |||||||||||||||||||| |||||||||||||||||||||    
T  54573561 tttaccctaactatttatgcttcatttgagaat---atagatagaattaaattcactttcgctacaaattcatattctcatt 54573639  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 55156546 - 55156653
Alignment:
Q  89 tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156546 tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt 55156645  T
Q  189 gatacaat 196  Q
    ||||||||    
T  55156646 gatacaat 55156653  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 54573279 - 54573386
Alignment:
Q  89 tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt 188  Q
    |||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  54573279 tggagtcaatgggaagtggataatctaaagaccggaattgaagtgtatgtacttgttttaaccaatcaagttactataatattttgttgtgtatttcatt 54573378  T
Q  189 gatacaat 196  Q
    ||||||||    
T  54573379 gatacaat 54573386  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 54573205 - 54573244
Alignment:
Q  15 cagagacgaagaagctttctccattgaaggagtatgaacc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54573205 cagagacgaagaagctttctccattgaaggagtatgaacc 54573244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 55156472 - 55156511
Alignment:
Q  15 cagagacgaagaagctttctccattgaaggagtatgaacc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55156472 cagagacgaagaagctttctccattgaaggagtatgaacc 55156511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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