View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8455_high_4 (Length: 468)
Name: NF8455_high_4
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 48845865 - 48846003
Alignment:
| Q |
19 |
aaattgagtatggtgaaaattaagtagttaaattgtagtgatttatattaaaattggtcgacataaaaagtaaggtgaaaaccaaacttagaagttaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48845865 |
aaattgagtatggtgaaaattaagtagttaaattgtagtgatttatattaaaattggtctacataaaaagtaaggtgaaaaccaaacttggaagttaaaa |
48845964 |
T |
|
| Q |
119 |
ttgcattttgaggcaaatgtatttgatttgacagtgacg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48845965 |
ttgcattttgaggcaaatgtatttgatttgacagtgacg |
48846003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 239 - 426
Target Start/End: Original strand, 48846071 - 48846258
Alignment:
| Q |
239 |
cttccttaaaagtgaatttaaagtttaaggctaaaacaatttctttagnnnnnnnntgttatgtccatgcttaaaattaaaaccaatattagagacaaga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48846071 |
cttccttaaaagtgaatttaaagtttaaggctaaaacaatttctttagaaaaaaaatgttatgtccatgcttaaaattaaaaccaatattagagacaaga |
48846170 |
T |
|
| Q |
339 |
tcaattttattcaaaaacacatgtctaagtcaataannnnnnncttaattgactggtttgtggggattctagagtggtgtcgctcgtc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
48846171 |
tcaattttattcaaaaacacatgtctaagttaataatttttttcttaattgacgggtttgtagggattctagagtggtgtcgctcgtc |
48846258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University