View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_high_6 (Length: 380)
Name: NF8455_high_6
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 2787203 - 2787551
Alignment:
| Q |
19 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatatgtctcactttctcgga |
118 |
Q |
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| T |
2787203 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatatgtctcactttctcgga |
2787302 |
T |
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| Q |
119 |
tcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaacttttagaaaaaatgactacaaattcaagcactactattcatagctaccc |
218 |
Q |
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| T |
2787303 |
tcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaactttcagaaaaaatgactacaaattctagcactactattcatagctaccc |
2787402 |
T |
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| Q |
219 |
catcaaaacggtggtcattttggttcaagagaaccgttcttttgaccacatgttgggttggatgaagtccctcaacccgaaaatcaacggtgttatcggt |
318 |
Q |
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| T |
2787403 |
catcaaaacagtggtcattttggttcaagagaaccgttcttttgaccacatgttgggttggatgaagtccctcaacccgaaaatcaacggtgttatcggt |
2787502 |
T |
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| Q |
319 |
acagagtcaaactcaatctccacatctgattccaactccaaccgggttc |
367 |
Q |
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| T |
2787503 |
acagagtcaaactcaatctccacatctgattccaactcgaaccgagttc |
2787551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2826678 - 2826904
Alignment:
| Q |
19 |
cattatagtatattctttatgccttcctaagttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatat----gtctcactttct |
114 |
Q |
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| T |
2826678 |
cattatagtatattctttatgccttcctaagttactgcaccaagaatataacttcaccacatgatttgagtgtagtatatatatatatgtctcactttct |
2826777 |
T |
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| Q |
115 |
cggatcggtatttccatttgagaattatcaacaaaatccacacaaaaa----aggaaacttttagaaaaaatgactacaaattcaagcactactattcat |
210 |
Q |
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| T |
2826778 |
tggattggtattcccatttgagaattatcaacaaaatccacacaaaaacaaaaggaaattttca-agaaaatgacttcaaattctagcacta--attcat |
2826874 |
T |
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| Q |
211 |
agctaccccatcaaaacggtggtcattttg |
240 |
Q |
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| T |
2826875 |
agctatcccatcaaaacgttggtcattttg |
2826904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 7362498 - 7362626
Alignment:
| Q |
97 |
atatatgtctcactttctcggatcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaacttttagaaaaaatgactacaaattcaa |
196 |
Q |
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|||||||| ||||||||||| | |||||| |||||||||||||||||||||||| ||| |||||| ||| |||| | ||||||||| ||||||| | |
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| T |
7362498 |
atatatgtttcactttctcgaaatggtattcccatttgagaattatcaacaaaatttaca-taaaaagcaaaattttcaagaaaatgacttcaaattcta |
7362596 |
T |
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| Q |
197 |
gcactactattcatagctaccccatcaaaa |
226 |
Q |
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| T |
7362597 |
gcattactactcgtagctacaccatcaaaa |
7362626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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