View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_high_7 (Length: 336)
Name: NF8455_high_7
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 11094181 - 11093865
Alignment:
| Q |
1 |
ttgcctcttgatcatttgttagccagcgtttgaaaagctcttcactatcggtgcgaaagctttgagaaacagtcttgaatcctaacatctccatggtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11094181 |
ttgcctcttgatcatttgttagccagcgtttgaaaagctcttcactatcggtgcgaaagctttgagaaacagtcttgaatcctaacatctccatggtagg |
11094082 |
T |
|
| Q |
101 |
taccggcataccaataggactctccatcactgtcttcaagaataactcctcacttgaattcttgtataaaccagaaaatcctctcccttccatttcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11094081 |
taccggcataccaataggactctccatcactgtcttcaagaataactcctcacttgaattcttgtataaaccagaaaatcctctcccttccatttcaaca |
11093982 |
T |
|
| Q |
201 |
cttcaaagatgcttgattataaagaaacacttgaatgatgcttgaacttattttcaacacaggtttttggctaagatctttcaggtttcataaatgaatt |
300 |
Q |
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| T |
11093981 |
ctttaaagatgcttgattataaagaaacacttgaatgatgcttgaacttattttcaacacaggtttttggctaagatctttcaggtttcataaatgaatt |
11093882 |
T |
|
| Q |
301 |
ttcagctgaattcttta |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
11093881 |
ttcagctgaattcttta |
11093865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 30277724 - 30277799
Alignment:
| Q |
123 |
tccatcactgtcttcaagaataactcctcacttgaattcttgtataaaccagaaaatcctctcccttccatttcaa |
198 |
Q |
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||||||| ||| |||||||| | ||||||||||||||||||||||| | | |||| |||||||||||||| |||| |
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| T |
30277724 |
tccatcaatgttttcaagaaaagttcctcacttgaattcttgtataagctataaaaccctctcccttccatctcaa |
30277799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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