View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_high_9 (Length: 248)
Name: NF8455_high_9
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 55101085 - 55101302
Alignment:
| Q |
14 |
tggacatcacgataagaatgatatatctacaccttctgatctattttaaggaactttctaatctattacattaaacnnnnnnnnaaaatttaggttaaac |
113 |
Q |
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| T |
55101085 |
tggacatcacgataagaatgatatatctacaccttccgatctattttaaggaactttctaatctattacattaaactttttattaaaatttaggttaaac |
55101184 |
T |
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| Q |
114 |
ctaattcaacatctttaaaactaaattgtaaggtgtgaaccatcaccatatataaactcattttccgataaggactcataccttatcctactagagaaac |
213 |
Q |
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| T |
55101185 |
ctaattcaacatctttgaaactaaat-----------------caccatatataaactcattttccgataaggactcataccttatcctactagagagac |
55101267 |
T |
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| Q |
214 |
agaagtagtaataatatcaatatgtgtcattattt |
248 |
Q |
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| T |
55101268 |
agaagtagtaataatatcaatatgtgtcattattt |
55101302 |
T |
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