View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8455_low_1 (Length: 806)

Name: NF8455_low_1
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8455_low_1
NF8455_low_1
[»] chr7 (1 HSPs)
chr7 (46-796)||(25692921-25693680)


Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 46 - 796
Target Start/End: Complemental strand, 25693680 - 25692921
Alignment:
Q  46 acaatctccggattttatgttaaacaacctcaaaaaatatcttaataatttgaaatatctaatctgatttggacaatttcaaatttcatccaatctaaac 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  25693680 acaatctccggattttatattaaacaacctcaaaaaatatcttaataatttgaaatatctaatctgatttaaacaatttcaaatttcattcaatctaaac 25693581  T
Q  146 aacatgtatatctaaacacctttaaattttcaacttctatttaacacgtcatt--------atctttctcttcaaaccacatcatctatctatcacnnnn 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||        
T  25693580 aacatgtatatctaaacacctttaaattttcaacttctatttaacacgtcattttatctctatctttctcttcaaaccacatcacctatctatcactttt 25693481  T
Q  238 nnnnnccttctaaaagtctattggttttaggcgttctataaatcaattttccaatctaagttcatctaaatcccttaagatgttaagtgttaactatata 337  Q
          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  25693480 ttttttcttctaaaagtctattggttttaggtgttctataaatcaattttccaatctaagttcatctaaatcccttaagatgttaa-------ctatata 25693388  T
Q  338 tgtgccacgtcaaatcacaaaatgcccataacaaacaccaacagacataacaagacaacactgcctgtcacattggcacggattgtacttatttcggcac 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25693387 tgtgccacgtcaaatcacaaaatgcccataacaaacaccaacagacataacaagacaacactgcctgtcacattggcacggattgtacttatttccgcac 25693288  T
Q  438 ttgtggttatcgattcctctttacttataataa--------tgacatttttctttgtttatgtttctttcttcattcgaccnnnnnnntgtttctttctt 529  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  25693287 ttgtggttatcgattcctctttacttataataaattaataatgacatttttctttgtttatgtttctttcttcattcgaccaaaaaaatgtttctttctt 25693188  T
Q  530 catttatttttctttggaaaaattgatgctcgattatttgcatggtctccttatccatccagcaagattggtttagacgtgggagtgttacgcctcagtt 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25693187 catttatttttctttggaaaaattgatgctcgattatttgcatggtctccttatccatccagcaagattggtttagacgtgggagtgttacgcctcagtt 25693088  T
Q  630 tattggccatgtgtgtgttcatgatacaatgtcatatattatacacggaaatatgcactagttaattgctttggaccttcttgtctcctgcatcacatgg 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25693087 tattggccatgtgtgtgttcatgatacaatgtcatatattatacacggaaatatgcactagttaattgctttggaccttcttgtctcctgcatcacatgg 25692988  T
Q  730 ggtggaagagaaaattacgtggatagtttatatgcctaacatttatatttataattacgtgtgtgcg 796  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25692987 ggtggaagagaacattacgtggatagtttatatgcctaacatttatatttataattacgtgtgtgcg 25692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University