View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_low_11 (Length: 239)
Name: NF8455_low_11
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34325414 - 34325635
Alignment:
| Q |
1 |
cttcagcattcgccggttctctaatgatctgcagaatcaaaatatgaattct-attagtaaatgttgtttaataagaagaaaaaattaatactccttccg |
99 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||| ||||||| ||| || |||||||||||||||| |||||||||| |||||||||||| | |
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| T |
34325414 |
cttcagcattcgccggttccctaatgatcttcagaatcaagatatgaactcttataagtaaatgttgtttaa---gaagaaaaaactaatactccttctg |
34325510 |
T |
|
| Q |
100 |
gtgattccattgaactttgaaaacgacaaataaataacaatttttgtctacaaaagcaacagttaaaaagaaacggagtagtaaacagcaatcatagcct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34325511 |
gtgattccattgaactttgaaaacgacaaataaataacaatttttgtctacaaaagcaacagttaaaaagaaacggagtagtaaacagcaatcatagcct |
34325610 |
T |
|
| Q |
200 |
taatttacctccacaagttcatcat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
34325611 |
taatttacctccacaagttcatcat |
34325635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 11061036 - 11061008
Alignment:
| Q |
107 |
cattgaactttgaaaacgacaaataaata |
135 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11061036 |
cattgaactttgaaaacgacaaataaata |
11061008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 46392621 - 46392649
Alignment:
| Q |
107 |
cattgaactttgaaaacgacaaataaata |
135 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
46392621 |
cattgaactttgaaaacgacaaataaata |
46392649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 3035600 - 3035628
Alignment:
| Q |
107 |
cattgaactttgaaaacgacaaataaata |
135 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
3035600 |
cattgaactttgaaaacgacaaataaata |
3035628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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