View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_low_12 (Length: 231)
Name: NF8455_low_12
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24014161 - 24013939
Alignment:
| Q |
1 |
cctgagcatgtattgaaagctttaggggtattcatctaatgaccaaaccatttaatctccaaattttgatgtggatccttttcaattttaatttgattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014161 |
cctgagcatgtattgaaagctttaggggtattcatctaatgaacaaaccatttaatctccaaattttgatgtggatccttttcaattttaatttgattgc |
24014062 |
T |
|
| Q |
101 |
ttatattatacgccctcttcttggacgttctgtgcattgatttgtatctttctcatgtggatccttttcaatggtgttattcttgatttttctttgcatt |
200 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014061 |
ttatataatacgctctcttcttggacgttctgtgcattgatttgtatctttctcatgtggatccttttcaatggtgttattcttgatttttctttgcatt |
24013962 |
T |
|
| Q |
201 |
gtagttgggtttgatgtccatct |
223 |
Q |
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|||||||||||||||| |||||| |
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| T |
24013961 |
gtagttgggtttgatggccatct |
24013939 |
T |
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