View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8455_low_2 (Length: 697)
Name: NF8455_low_2
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 51124406 - 51124754
Alignment:
| Q |
1 |
accaacctttatccatatttatttattttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatg |
100 |
Q |
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| T |
51124406 |
accaacctttatccatatttattttttttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatg |
51124505 |
T |
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| Q |
101 |
ctcaactcaatccaatgccaataatgttggaaaacttagatagtataaatgaggttctagtttgattcaacnnnnnnnncaataatgctggacttgtgct |
200 |
Q |
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| T |
51124506 |
ctcaactcaatccaatgccaataatgttggaagacttagatagtataaatgaggttctagtttgattcaacaaaaaaaacaataatgctggaattgtgct |
51124605 |
T |
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| Q |
201 |
gtactttaaattcaattgaatagcaataattgattgccccactcgagtgcccacattttaaggtctggatgattttgtagctacttgctagcctgggttc |
300 |
Q |
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| T |
51124606 |
gtacttaaaattcaattgaatagcaataattgattgccccactcgagtgcccacattttaaggtctggatgattttgtagctacttgctagcctgggttc |
51124705 |
T |
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| Q |
301 |
actcgtgcaacaaaatgacaatatatatgagattattgggtgtgacacg |
349 |
Q |
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| T |
51124706 |
actcgtgcaacaaaatgacaatatgtatgagattattgggtgtgacacg |
51124754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 537 - 681
Target Start/End: Original strand, 51124945 - 51125089
Alignment:
| Q |
537 |
gtttttagaacaagatgtacattttctggggaaggtttattttgcttattgcagcatcctttgaaattatgattgggtcactacttaattccgggaagtt |
636 |
Q |
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| T |
51124945 |
gtttttagaacaagatgtacattttctggggaaggtttattttgcttattgcagcaacctttgaaattatgattgggtcactacttaattccgggaagtt |
51125044 |
T |
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| Q |
637 |
tatttttctaattgactatagggaaaaagtaagcttccaggaagg |
681 |
Q |
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| T |
51125045 |
tatttttctaattgactatagggaaaaagtaagcttccaggaagg |
51125089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 51124778 - 51124864
Alignment:
| Q |
378 |
atgttatgttaggtatatgctatatcaatttttctctgccgttccttgtcattcagatatccatcgattccattcatgcgcaatgac |
464 |
Q |
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| T |
51124778 |
atgttatattaggtatatgctatatcaatttttctctgccgttccttgtcattcagatatccatcgattccattcatgcgcaatgac |
51124864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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