View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8455_low_6 (Length: 382)
Name: NF8455_low_6
Description: NF8455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8455_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 34260134 - 34260509
Alignment:
| Q |
1 |
gtgcacaagcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgttatccttctactagagagtgcagccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260134 |
gtgcacaagcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgttatccttctactagagagtgcagccaa |
34260233 |
T |
|
| Q |
101 |
aagagacctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattctaggagtttccaaatttggactactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260234 |
aagagacctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattctaggagtttccaaatttggactactt |
34260333 |
T |
|
| Q |
201 |
tcgccgccattgtctctcacatttctatgtccatgaagatccgtgtcatcaacgcagtgcaatatcaaggaacggtcttctttctcaaaacaaagatttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260334 |
tcgccgccattgtctctcacatttctatgtccatgaagatccgtgtcatcaacgcagttcaatatcaaggaacggtcttctttctcaaaacaaagatttg |
34260433 |
T |
|
| Q |
301 |
attctctaaacctaggagaatttgacaggcaacagttttttccacatccattttccctattatctagaacaccaaa |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260434 |
attctctaaacctaggagaatttgacaggcaacagttttttccacatccattttccctattatctagaacaccaaa |
34260509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 43112308 - 43112484
Alignment:
| Q |
8 |
agcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgttatccttctactagagagtgcagccaaaagagac |
107 |
Q |
| |
|
|||||||||| | || ||||| || || || || ||||| |||||||| || ||||| ||||||| |||||||| ||||||| |||| || |||||||| |
|
|
| T |
43112308 |
agcaaatatcctcgatgcagatgtttttcccgttccacgaggaccatgaaatagatagaatgatgctatccttcctctagagattgcacccgaaagagac |
43112407 |
T |
|
| Q |
108 |
ctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattctaggagtttc |
184 |
Q |
| |
|
|| | ||||||| |||||| |||||||||| || ||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
43112408 |
ttaccaaccatattttgtccaaccaaatcattgaaagatttcggcctaaatttcatagataaacttctaggagtttc |
43112484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University