View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8456_high_4 (Length: 297)

Name: NF8456_high_4
Description: NF8456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8456_high_4
NF8456_high_4
[»] chr8 (4 HSPs)
chr8 (14-297)||(35853773-35854059)
chr8 (106-285)||(35858437-35858616)
chr8 (23-75)||(35748467-35748519)
chr8 (94-196)||(35727703-35727805)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 35853773 - 35854059
Alignment:
Q  14 atgaatcaaagagcatcagacaaagttcaa-gagacaaattgcaagagcgctaatgaaacaaacacatacnnnnnnngctgaaagactcagttaatacaa 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  35853773 atgaatcaaagagcatcagacaaagttcaaagagacaaattgcaagagcgctaatgaaacaaacacatacaaaaaaagctgaaagactcagttaatacaa 35853872  T
Q  113 gattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35853873 gattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttg 35853972  T
Q  213 aactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatg--tttctgtcaaaaaac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35853973 aactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgtttttctgtcaaaaaac 35854059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 285
Target Start/End: Original strand, 35858437 - 35858616
Alignment:
Q  106 aatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacactt 205  Q
    |||| |||||||||||||||| ||||| |||| | |||||||||||||||  |||||||| ||||||||||||| |||||||| ||||||| ||| ||||    
T  35858437 aataaaagattggatcattgagctccacaagctacggaggataaattaagtaaaattgagtcatgaagttaagattgatttctaattcagttgaaaactt 35858536  T
Q  206 ctgtttgaactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgttt 285  Q
    | ||||||| ||||| ||| |||||| | |||||||||||| ||| ||  | ||||||||||||||||||||||||||||    
T  35858537 cagtttgaaataggcctggcatggatagttcaactcattcagcccaacagaaaatggtatttatttgaactagtatgttt 35858616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 35748519 - 35748467
Alignment:
Q  23 agagcatcagacaaagttcaagagacaaattgcaagagcgctaatgaaacaaa 75  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  35748519 agagcatcaaacaaagttcaagagacaaattgcaagagcactaatgaaacaaa 35748467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 35727805 - 35727703
Alignment:
Q  94 aaagactcagttaatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattc 193  Q
    ||||||||| || |||||||||||| |||||||  ||||||||  |||||   |||||||||||||||||  ||||| | |||||| |||||||||||||    
T  35727805 aaagactcaatttatacaagattggctcattgagttccaaaagtcagggaacttaaattaagccaaattggaccatgcaattaagactgatttcttattc 35727706  T
Q  194 agt 196  Q
    |||    
T  35727705 agt 35727703  T

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