View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8456_high_6 (Length: 249)
Name: NF8456_high_6
Description: NF8456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8456_high_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 9076817 - 9076578
Alignment:
| Q |
10 |
attattctttctagctaattatgcttgtttctccatttaatttgatctcattgacacctagggggttgtaaagcgcgaaacacatttcacttcacagcgt |
109 |
Q |
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| T |
9076817 |
attattctttctagctaattatgcttgtttctccatttaatttgatctcattgacacctagggggttgtaaagcgcgaaacacatttcacttcacagcgt |
9076718 |
T |
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| Q |
110 |
cctgcaaatgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagcag |
209 |
Q |
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| T |
9076717 |
cctgcaaatgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaacaaatttacaacaagcaa |
9076618 |
T |
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| Q |
210 |
cagtcttgatttttctatttgttaagacatctgatttgtg |
249 |
Q |
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| T |
9076617 |
cagtcttgatttttctatttgttaagacatcagatttgtg |
9076578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 9085589 - 9085364
Alignment:
| Q |
10 |
attattctttctagctaattatgcttgttt-ctccatttaatttgatctcattgacacc-tagggggttgtaaagcgcgaaacacatttcacttcacagc |
107 |
Q |
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| T |
9085589 |
attattctttctagctaactatgctttttttctccattttatttgtacttatttacaacatagggggttgtaaagcgcgaaacacatttcacttcgcagc |
9085490 |
T |
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| Q |
108 |
gtcctgcaaatgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagc |
207 |
Q |
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| T |
9085489 |
gtcctgcaaatgaaattatgtctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaactaattaacaacaagc |
9085390 |
T |
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| Q |
208 |
agcagtcttgatttttctatttgtta |
233 |
Q |
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| T |
9085389 |
actagtcttcatttctcaatttgtta |
9085364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 6416793 - 6416568
Alignment:
| Q |
10 |
attattctttctagctaattatgcttgttt-ctccatttaatttgatctcattgacacc-tagggggttgtaaagcgcgaaacacatttcacttcacagc |
107 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||| ||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
6416793 |
attattctttctagctaactatgctttttttctccattttatttgtacttatttacaacatagggggttgtaaagcgcgaaacacatttcacttcgcagc |
6416694 |
T |
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| Q |
108 |
gtcctgcaaatgaaattatttctaagattgaggaggctgccaaacctctcggatttaatgttcataagcgcaattacaaggtaacaaatttacaacaagc |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
6416693 |
gtcctgcaaatgaaattatgtctaagattgaggaggctgccaaacctctcggatttaatgttcacaagcgcaattacaaggtaactaattaacaacaagc |
6416594 |
T |
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| Q |
208 |
agcagtcttgatttttctatttgtta |
233 |
Q |
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| T |
6416593 |
actagtcttcatttctcaatttgtta |
6416568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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