View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8456_low_1 (Length: 998)

Name: NF8456_low_1
Description: NF8456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8456_low_1
NF8456_low_1
[»] chr4 (6 HSPs)
chr4 (702-986)||(28340539-28340821)
chr4 (397-622)||(28340256-28340488)
chr4 (21-227)||(28339860-28340075)
chr4 (21-146)||(44791114-44791239)
chr4 (145-229)||(44794885-44794984)
chr4 (95-128)||(50135287-50135320)
[»] chr6 (2 HSPs)
chr6 (89-128)||(17772315-17772354)
chr6 (278-315)||(15126269-15126306)
[»] chr3 (1 HSPs)
chr3 (89-128)||(41054001-41054040)
[»] chr2 (2 HSPs)
chr2 (278-309)||(22437244-22437275)
chr2 (280-319)||(23663993-23664032)
[»] chr1 (1 HSPs)
chr1 (283-317)||(8758405-8758439)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 702 - 986
Target Start/End: Original strand, 28340539 - 28340821
Alignment:
Q  702 aatggtgagccaataagcccgaactccaaccaaacacaaacaacaacccactcggagttgcgagtgctcactgatctgctcacttttcacctcactctta 801  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28340539 aatggtcagccaataagcccgaactccaaccaaacacaaacaacaacccactcggagttgcgagtgctcactgatctgctcacttttcacctcactctta 28340638  T
Q  802 actgcttccccttccttcttaacaattaggttaagaannnnnnnnnnnnnnnnnnnncccccgactttcttcaattttcgaagcttcatatccttcgagt 901  Q
    |||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||    
T  28340639 actgcttccccttccttcttaacaattaggttaagaa--tctctctctctctctctccccccgactttcttcaattttcgaagcttcatatccttcgagt 28340736  T
Q  902 tacaacctgcgatctgcttttccgaaattcacctttgtttcaaatgcaaataaattgatcaatgtctcaaccaccactctctgct 986  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28340737 tacaacctgcgatttgcttttccgaaattcacctttgtttcgaatgcaaataaattgatcaatgtctcaaccaccactctctgct 28340821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 397 - 622
Target Start/End: Original strand, 28340256 - 28340488
Alignment:
Q  397 aatttatgattgcctacgttgttcaagtaaaacacccaatatcatcatcaaatatttgtaggccaaatactagacagtagaccaacaatggatggattta 496  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28340256 aatttatgattgtccacgttgttcaagtaaaacacccaatatcatcatcaaatatttgtaggccaaatactagacagtagaccaacaatggatggattta 28340355  T
Q  497 taaaatttaagtctattacaagtca---------cgtaacttttattgagattatataatccggttcgggaatatttttggtattttggcaaggcgtgcg 587  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||    
T  28340356 taaaatttaagtctattacaagtcacattttaatcgtaacttttattgagattatataatccggttcaggaatatttttgttattttgacaacgcgtgcg 28340455  T
Q  588 agaaaataacagagtcttttgtgaatgaaggaacc 622  Q
    ||||||||||  ||||||||||||||||| |||||    
T  28340456 agaaaataac--agtcttttgtgaatgaaagaacc 28340488  T

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Target: chr4; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 28339860 - 28340075
Alignment:
Q  21 tgctgaatcgcggtgcgaggtgaaccaccgcggtagcacctcagttgctgagtttcgagtcggaggtgaaccttcactcttttgcttttccacttttact 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28339860 tgctgaatcgcggtgcgaggtgaagcaccgcggtagcacctcagttgctgagtttcgagtcggaggtgaaccttcactcttttgcttttccacttttacc 28339959  T
Q  121 cttctttcagctgatgggtatgggtatgggtattatcacatttatagaggaagggggaagtgat---------------gattattgggtagagtctttg 205  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||               |||||||||||||||| ||||    
T  28339960 cttctttcagctgatgggtatgggtat------tatcacatttatagaggaagggggaagtgattcagcagcaatactggattattgggtagagtttttg 28340053  T
Q  206 ttgttgttcaacttgaataggt 227  Q
    |||||||| |||||||||||||    
T  28340054 ttgttgttgaacttgaataggt 28340075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 44791114 - 44791239
Alignment:
Q  21 tgctgaatcgcggtgcgaggtgaaccaccgcggtagcacctcagttgctgagtttcgagtcggaggtgaaccttcactcttttgcttttccacttttact 120  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44791114 tgctgaatcgcggtgcgaggtgaagcaccgcggcagcacctcagttgctgagtttcgagtcggaggtgaaccttcactcttttgcttttccacttttacc 44791213  T
Q  121 cttctttcagctgatgggtatgggta 146  Q
    ||||||||||||||||||||||||||    
T  44791214 cttctttcagctgatgggtatgggta 44791239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 44794885 - 44794984
Alignment:
Q  145 tatgggtattatcacatttatagaggaagggggaagtgat---------------gattattgggtagagtctttgttgttgttcaacttgaataggtag 229  Q
    ||||||||||||||||||||||||||||||||||||||||               |||||||||||||||| |||||||||||| |||||||||||||||    
T  44794885 tatgggtattatcacatttatagaggaagggggaagtgattcagcagcaatactggattattgggtagagtttttgttgttgttgaacttgaataggtag 44794984  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 50135287 - 50135320
Alignment:
Q  95 cactcttttgcttttccacttttactcttctttc 128  Q
    ||||||||||||||||||||||||| ||||||||    
T  50135287 cactcttttgcttttccacttttacccttctttc 50135320  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 17772315 - 17772354
Alignment:
Q  89 aaccttcactcttttgcttttccacttttactcttctttc 128  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  17772315 aacctccactcttttgcttttccacttttacccttctttc 17772354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 15126306 - 15126269
Alignment:
Q  278 ccggagttcgaaccccaaccctacatataataatgtat 315  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  15126306 ccggagttcgaacccctcccctacatataataatgtat 15126269  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 41054040 - 41054001
Alignment:
Q  89 aaccttcactcttttgcttttccacttttactcttctttc 128  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  41054040 aacctccactcttttgcttttccacttttacccttctttc 41054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 22437244 - 22437275
Alignment:
Q  278 ccggagttcgaaccccaaccctacatataata 309  Q
    ||||||||||||||||||||||||||||||||    
T  22437244 ccggagttcgaaccccaaccctacatataata 22437275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 23664032 - 23663993
Alignment:
Q  280 ggagttcgaaccccaaccctacatataataatgtatgttc 319  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  23664032 ggagttcgaaccccaaccctgcatataataatgcatgttc 23663993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 8758405 - 8758439
Alignment:
Q  283 gttcgaaccccaaccctacatataataatgtatgt 317  Q
    |||||||||||||| ||||||||||||||||||||    
T  8758405 gttcgaaccccaactctacatataataatgtatgt 8758439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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