View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8456_low_2 (Length: 406)
Name: NF8456_low_2
Description: NF8456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8456_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 7727905 - 7727596
Alignment:
| Q |
82 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatatacctccctagacgtcaatgtatatatggttggatgcattcaaa |
181 |
Q |
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| T |
7727905 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatacacctccctagacgtcaatgtatatatggttggatgcattcaaa |
7727806 |
T |
|
| Q |
182 |
gggtcttatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaa |
281 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7727805 |
gggtcatatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagattaa |
7727706 |
T |
|
| Q |
282 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataagnnnnnnnnctccaaaattaagatgaagactcctcca |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7727705 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataag-aaaaaaactccaaaattaagatgaagactcctcca |
7727607 |
T |
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| Q |
382 |
aacatgtttct |
392 |
Q |
| |
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|||| |||||| |
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| T |
7727606 |
aacaagtttct |
7727596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 343
Target Start/End: Complemental strand, 7731965 - 7731814
Alignment:
| Q |
194 |
attattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaa-ccatactta |
292 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| | |
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| T |
7731965 |
attattttaagcctccttgtttgaccaactttcactaaaacagatatacatcctggcgactacgaattctataaatagcaaagcttaaaattaatactaa |
7731866 |
T |
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| Q |
293 |
tcacccaaacttgagtactctctcaacccaaa-ctcaaaccacctcttcata |
343 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
7731865 |
tcacccaaacttgagtactctcttaacacaaagctcaaaccacctcttcata |
7731814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7728174 - 7728089
Alignment:
| Q |
5 |
tatgtaaagaatagacttggtgcctaactataggtttatcaattcctaggaggttgcgcctttatgtcccctcgttatttttgttc |
90 |
Q |
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| T |
7728174 |
tatgtaaagaatagacttggtgcctaactataggtttatcaattcctaggaggttgcggctttatgtcccctcgttatttttgttc |
7728089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 7740106 - 7739995
Alignment:
| Q |
188 |
tatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaaccat |
287 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
7740106 |
tatctcattattttaagcctacttgtttgaccaactttcactaaaacagata--catactggctgctacgttttctataaatagcaaagcttaaaatcat |
7740009 |
T |
|
| Q |
288 |
acttatcacccaaa |
301 |
Q |
| |
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|||||||||||||| |
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| T |
7740008 |
acttatcacccaaa |
7739995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 7699766 - 7699728
Alignment:
| Q |
354 |
ctccaaaattaagatgaagactcctccaaacatgtttct |
392 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
7699766 |
ctccaaaattaagatgaagacttctccaaacatgtttct |
7699728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 392
Target Start/End: Complemental strand, 7731791 - 7731756
Alignment:
| Q |
357 |
caaaattaagatgaagactcctccaaacatgtttct |
392 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
7731791 |
caaaattaagatgaagactactccaaacatgtttct |
7731756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 7739952 - 7739914
Alignment:
| Q |
354 |
ctccaaaattaagatgaagactcctccaaacatgtttct |
392 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||| |
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| T |
7739952 |
ctccaaaattaagatgaagactactccaaacaagtttct |
7739914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3562384 - 3562324
Alignment:
| Q |
1 |
atattatgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt |
59 |
Q |
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||||||||| |||||||||||||| ||||||| | |||||||||||| | |||||||||| |
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| T |
3562384 |
atattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt |
3562324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 34066119 - 34066064
Alignment:
| Q |
6 |
atgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt |
59 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||| |
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| T |
34066119 |
atgttaagaatagacttggtatgcctaattataggtttagcaatttctaggaggtt |
34066064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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