View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8456_low_3 (Length: 321)

Name: NF8456_low_3
Description: NF8456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8456_low_3
NF8456_low_3
[»] chr6 (19 HSPs)
chr6 (1-302)||(28782564-28782865)
chr6 (145-292)||(27657189-27657337)
chr6 (145-302)||(28789911-28790066)
chr6 (4-117)||(26626743-26626856)
chr6 (4-117)||(26732720-26732833)
chr6 (14-117)||(26953215-26953318)
chr6 (161-234)||(26659536-26659609)
chr6 (161-234)||(26765507-26765580)
chr6 (177-292)||(27607614-27607732)
chr6 (154-234)||(27600870-27600950)
chr6 (180-234)||(26659618-26659672)
chr6 (180-234)||(26765589-26765643)
chr6 (191-262)||(27424707-27424781)
chr6 (148-234)||(26638970-26639059)
chr6 (148-234)||(26744936-26745025)
chr6 (145-202)||(28782537-28782594)
chr6 (154-225)||(27600696-27600770)
chr6 (145-234)||(26650101-26650193)
chr6 (145-234)||(26756069-26756161)
[»] scaffold0277 (2 HSPs)
scaffold0277 (5-302)||(1000-1297)
scaffold0277 (145-302)||(10133-10288)
[»] scaffold0419 (1 HSPs)
scaffold0419 (145-294)||(11055-11204)
[»] chr4 (8 HSPs)
chr4 (145-292)||(18728023-18728173)
chr4 (145-292)||(18651999-18652149)
chr4 (145-292)||(18676057-18676207)
chr4 (145-292)||(18686097-18686247)
chr4 (145-292)||(18720587-18720737)
chr4 (193-292)||(18693627-18693729)
chr4 (145-199)||(18695999-18696053)
chr4 (191-262)||(18076774-18076848)
[»] chr1 (1 HSPs)
chr1 (4-117)||(26139614-26139727)
[»] scaffold0003 (1 HSPs)
scaffold0003 (191-262)||(62582-62656)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 28782564 - 28782865
Alignment:
Q  1 ttggcagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782564 ttggcagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttg 28782663  T
Q  101 ttgctaagtgaaacaaagcaaagcacttctaagaaaaagcatgcggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgt 200  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782664 gtgcttagtgaaacaaagcaaagcacttctaagaaaaagcatgcggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgt 28782763  T
Q  201 caggcatgcaaaacttggtgcttactgaaacaaatgaggaacatctttgctagatagattcctttgtccaggtacatcattatcattattataagctaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782764 caggcatgcaaaacttggtgcttactgaaacaaatgaggaacatctttgctagatagattcctttgtccaggtacatcattatcattattataagctaat 28782863  T
Q  301 ta 302  Q
    ||    
T  28782864 ta 28782865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 27657337 - 27657189
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa-atgaggaaca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||| |  |||||||    
T  27657337 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcagtcatgcagaacttggttcttaatgaaacaagaataggaaca 27657238  T
Q  244 tctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
     | | |||||||||||||||| |||||||||||||||||||||||||||    
T  27657237 ccatggctagatagattccttggtccaggtacatcattatcattattat 27657189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 145 - 302
Target Start/End: Original strand, 28789911 - 28790066
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatgaggaacat 244  Q
    |||||||| |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  ||     
T  28789911 ggaagtggtagtttcagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaaaagagg--cac 28790008  T
Q  245 ctttgctagatagattcctttgtccaggtacatcattatcattattataagctaatta 302  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  28790009 cattgctagatagattccttcgtccaggtacatcattatcattattataaactaatta 28790066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 26626743 - 26626856
Alignment:
Q  4 gcagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttgttg 103  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  26626743 gcagcagcaacatctagctttactgtcacagcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaatttggtg 26626842  T
Q  104 ctaagtgaaacaaa 117  Q
    || | |||||||||    
T  26626843 ctgaatgaaacaaa 26626856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 26732720 - 26732833
Alignment:
Q  4 gcagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttgttg 103  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  26732720 gcagcagcaacatctagctttactgtcacagcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaatttggtg 26732819  T
Q  104 ctaagtgaaacaaa 117  Q
    || | |||||||||    
T  26732820 ctgaatgaaacaaa 26732833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 26953215 - 26953318
Alignment:
Q  14 catctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttgttgctaagtgaaa 113  Q
    |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| | |||||    
T  26953215 catctagctttactgtcattgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggagtttgatgcttactgaaa 26953314  T
Q  114 caaa 117  Q
    ||||    
T  26953315 caaa 26953318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 26659536 - 26659609
Alignment:
Q  161 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  26659536 gagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaa 26659609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 26765507 - 26765580
Alignment:
Q  161 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  26765507 gagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaa 26765580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 27607732 - 27607614
Alignment:
Q  177 agcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatga---ggaacatctttgctagatagattcctttgtccaggt 273  Q
    ||||||||||||||||||||||||||| |||||  |||||||| |||| ||||||||| ||   |||||| | | ||||||| ||||||||  |||||||    
T  27607732 agcaacaacatctagctttagtgtcagccatgcggaacttggttcttaatgaaacaaaagaattggaacaccatggctagattgattccttgctccaggt 27607633  T
Q  274 acatcattatcattattat 292  Q
    |||||||||||||||||||    
T  27607632 acatcattatcattattat 27607614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 27600950 - 27600870
Alignment:
Q  154 agtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    ||||||||||||||||| ||||||||| ||  |||||||| ||||||| |||||||  |||||||||||||||||||||||    
T  27600950 agtttcggagacagaaagtttgcagcagcagtatctagctgtagtgtccggcatgcggaacttggtgcttactgaaacaaa 27600870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 26659618 - 26659672
Alignment:
Q  180 aacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  26659618 aacaccatctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaa 26659672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 26765589 - 26765643
Alignment:
Q  180 aacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  26765589 aacaccatctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaa 26765643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 27424781 - 27424707
Alignment:
Q  191 gctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatg---aggaacatctttgctagatagattcc 262  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |   ||||||| | ||| ||||||||||||    
T  27424781 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattcc 27424707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 26638970 - 26639059
Alignment:
Q  148 agtgggagtttcggagacagaaattttgcagcaacaacatctag---ctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||  |||| ||||||||| ||||| ||||||||||   ||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26638970 agtgggagttttagagatagaaatttttcagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaa 26639059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 26744936 - 26745025
Alignment:
Q  148 agtgggagtttcggagacagaaattttgcagcaacaacatctag---ctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||  |||| ||||||||| ||||| ||||||||||   ||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26744936 agtgggagttttagagatagaaatttttcagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaa 26745025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 28782537 - 28782594
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtca 202  Q
    |||||||| |||||| ||||||||||||| |||||| ||||||||||| ||| |||||    
T  28782537 ggaagtggtagtttcagagacagaaatttggcagcagcaacatctagcattattgtca 28782594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 27600770 - 27600696
Alignment:
Q  154 agtttcggagacagaaattttgcagcaacaacatctagctttagtg---tcaggcatgcaaaacttggtgcttac 225  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||| ||   ||||||||||| ||| ||||||||||    
T  27600770 agtttcagagacagaaagtttgcagcagcaagatctagctttattgtcatcaggcatgcagaacatggtgcttac 27600696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 26650101 - 26650193
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatc---tagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||||||  ||||||||||||||||||| ||  |||   ||||||||||||||| |||||   | ||||| || |||||||||||    
T  26650101 ggaagtgggagtttcaaagacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctcactgaaacaaa 26650193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 26756069 - 26756161
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatc---tagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 234  Q
    |||||||||||||||  ||||||||||||||||||| ||  |||   ||||||||||||||| |||||   | ||||| || |||||||||||    
T  26756069 ggaagtgggagtttcaaagacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctcactgaaacaaa 26756161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 1297 - 1000
Alignment:
Q  5 cagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttgttgc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1297 cagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttggtgc 1198  T
Q  105 taagtgaaacaaagcaaagcacttctaagaaaaagcatgcggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcagg 204  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1197 ttagtgaaacaaagcaaagcacttctaagaaaaagcatgcggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcagg 1098  T
Q  205 catgcaaaacttggtgcttactgaaacaaatgaggaacatctttgctagatagattcctttgtccaggtacatcattatcattattataagctaatta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  1097 catgcaaaacttggtgcttactgaaacaaatgaggaacatctttgctagatagattccttcgtccaggtacatcattatcattattataaactaatta 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 145 - 302
Target Start/End: Complemental strand, 10288 - 10133
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatgaggaacat 244  Q
    |||||||| |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||  ||     
T  10288 ggaagtggtagtttcagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaaaagagg--cac 10191  T
Q  245 ctttgctagatagattcctttgtccaggtacatcattatcattattataagctaatta 302  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  10190 cattgctagatagattccttcgtccaggtacatcattatcattattataaactaatta 10133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 145 - 294
Target Start/End: Original strand, 11055 - 11204
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatgaggaacat 244  Q
    |||||||| |||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  11055 ggaagtggtagtttcagagacagaaatttggcagcagcaatatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaaagaggaacac 11154  T
Q  245 ctttgctagatagattcctttgtccaggtacatcattatcattattataa 294  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  11155 cattgctagatagattccttcgtccaggtacatcattatcattattataa 11204  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 18728173 - 18728023
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatg---aggaa 241  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| |   |||||    
T  18728173 ggaagtgggagtttcagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaaaagaaaaggaa 18728074  T
Q  242 catctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
    || | | | |||||| ||||||| |||||||||||||||||||||||||||    
T  18728073 caccatggatagatatattccttggtccaggtacatcattatcattattat 18728023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 18652149 - 18651999
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaa 241  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||   |  |||||    
T  18652149 ggaagtgggagtttcagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaa 18652050  T
Q  242 catctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
    || | | |||||||| ||||||| |||||||||||||||| ||||||||||    
T  18652049 caccatggctagatatattccttggtccaggtacatcattgtcattattat 18651999  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 18676207 - 18676057
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaa 241  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||  ||||||||||||||||||||||   |  |||||    
T  18676207 ggaagtgggagtttcagagacagaaattttgcagcagcaacatctagttttattgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaa 18676108  T
Q  242 catctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
    || | | |||||||| ||| ||| |||||||||||||||||||||||||||    
T  18676107 caccatggctagatatatttcttggtccaggtacatcattatcattattat 18676057  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 18686247 - 18686097
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaa 241  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||   |  |||||    
T  18686247 ggaagtgggagtttcagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttaatgaaacaatagaaaaggaa 18686148  T
Q  242 catctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
    || | | | |||||| |||||||  ||||||||||||||||||||||||||    
T  18686147 caccatggatagatatattccttgatccaggtacatcattatcattattat 18686097  T

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Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 18720737 - 18720587
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaa 241  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| |||| || |||||||||  ||||||||||||||||||||||   |  |||||    
T  18720737 ggaagtgggagtttcagagacagaaattttgcagcagcaacatctagttttattgccaggcatgcggaacttggtgcttactgaaacaatagaaaaggaa 18720638  T
Q  242 catctttgctagatagattcctttgtccaggtacatcattatcattattat 292  Q
    || | | |||||||| ||||||| |||||||||||||||||||||||||||    
T  18720637 caccatggctagatatattccttggtccaggtacatcattatcattattat 18720587  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 18693729 - 18693627
Alignment:
Q  193 tttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatga---ggaacatctttgctagatagattcctttgtccaggtacatcattatcattat 289  Q
    |||||||||||||||||  ||||||||||||||||||||||  ||   |||||| | | |||||||| ||||||| ||||||||||||||||||||||||    
T  18693729 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcattat 18693630  T
Q  290 tat 292  Q
    |||    
T  18693629 tat 18693627  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 18696053 - 18695999
Alignment:
Q  145 ggaagtgggagtttcggagacagaaattttgcagcaacaacatctagctttagtg 199  Q
    |||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  18696053 ggaagtcggagtttcagagagagaaattttgcagcagcaacatctagctttagtg 18695999  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 18076774 - 18076848
Alignment:
Q  191 gctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatg---aggaacatctttgctagatagattcc 262  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |   ||||||| | ||| ||||||||||||    
T  18076774 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattcc 18076848  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 26139614 - 26139727
Alignment:
Q  4 gcagcagcaacatctagcattattgtcactgcaacaacaaatggctttattaccacagcaacaacgtataactgttttgtcaggcatgtggaacttgttg 103  Q
    ||||| ||| ||| |||| ||||||||| |||||||| |||||||||| ||||| || | |  |||||||||  | |||||| |||||||||||||| ||    
T  26139614 gcagcggcatcatttagctttattgtcaatgcaacaaaaaatggctttgttaccgcaacgaagacgtataacattattgtcacgcatgtggaacttggtg 26139713  T
Q  104 ctaagtgaaacaaa 117  Q
    || | |||||||||    
T  26139714 cttaatgaaacaaa 26139727  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 62582 - 62656
Alignment:
Q  191 gctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaatg---aggaacatctttgctagatagattcc 262  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |   ||||||| | ||| ||||||||||||    
T  62582 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattcc 62656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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