View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8457_high_4 (Length: 326)
Name: NF8457_high_4
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 55447702 - 55447896
Alignment:
| Q |
10 |
agcagaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatgatgcagttgcttaaagggtagaaatgaaattttgtgac |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55447702 |
agcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaataggcagagacgtggggtgatgcagttacttaaagggtagaaatgaaattttgtgac |
55447801 |
T |
|
| Q |
110 |
atttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggataatagttgaaaataattatcgggtata |
204 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55447802 |
atttaatggatgttaaccgctgggaataagtgattcccatcctttgggttgggaataaaaaatgggataatagttgaaaataattatcgggtata |
55447896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 41415910 - 41415615
Alignment:
| Q |
10 |
agcagaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatg--atgcagttgcttaaagggtagaaatgaaattttgtg |
107 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||| ||||||| || | ||| |||||||||| |||| ||| | || ||||||||||||| ||||| | |
|
|
| T |
41415910 |
agcaaaacctgtgtaaagacaagaagaaaacgtaacacataagtaggtagaaacgtgggatgccatgcggttac--aaggggtagaaatgaacttttgag |
41415813 |
T |
|
| Q |
108 |
acatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagttgaaaataattatcgggtataa |
205 |
Q |
| |
|
| ||| ||||||||||||||| ||||||||||| |||||||||||||| | |||| ||||||||||||| | |||||| |||||||||| ||||||||| |
|
|
| T |
41415812 |
atatt-aatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaataaaaaatgggagaatatagttaaaaataattaccgggtataa |
41415714 |
T |
|
| Q |
206 |
ttaattccttaaaacnnnnnnnnnnnnatgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatgaacttattttgtagaagtgaa |
305 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||| | ||| |
|
|
| T |
41415713 |
ttaattccttggaac----ctttttgtatgcatgtgtaccaaacattgcaataaatagttcccatcttacattcccaggaacttattttgtagaggggaa |
41415618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 55447954 - 55448029
Alignment:
| Q |
233 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatgaacttattttgtagaagtgaaaca |
308 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55447954 |
atgcatgtgtatcaaacattggaataaatagttcctatcttacattctcagaaacttattttgtagaagtgaaaca |
55448029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 87 - 290
Target Start/End: Original strand, 41418302 - 41418502
Alignment:
| Q |
87 |
gggtagaaatgaaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagtt |
184 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||||||||| | | ||||||||| ||||||||||||| |||||| |||||| |||||||| |||||| |
|
|
| T |
41418302 |
gggtagaaatgaacttttgagatatt-aatggatgttaactgcttggaataagtcattcccatcctttctgttgggaataaaatatgggataatatagtt |
41418400 |
T |
|
| Q |
185 |
gaaaataattatcgggtataattaattccttaaaacnnnnnnnnnnnnatgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatg |
284 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| || | |
|
|
| T |
41418401 |
aaaaataattaccggatataattaatttcttggaac----ctttttgtatgcatgtgtaccaaatattggaataaatagttcccatcttacattcccagg |
41418496 |
T |
|
| Q |
285 |
aactta |
290 |
Q |
| |
|
|||||| |
|
|
| T |
41418497 |
aactta |
41418502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 36366884 - 36366930
Alignment:
| Q |
233 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattc |
279 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
36366884 |
atgcatgtataccaaacataggaataaataattctcatcttagattc |
36366930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 6813394 - 6813440
Alignment:
| Q |
233 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattc |
279 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
6813394 |
atgcatgtataccaaacataggaataaataattctcatcttagattc |
6813440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University