View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8457_low_2 (Length: 438)
Name: NF8457_low_2
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 16685733 - 16685313
Alignment:
| Q |
1 |
tgaattgaatgggaggaatgttaattcttctataccgatcactgatccggatgttgtaagagtcaagggagataatgtagtgcatatgattgattctgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685733 |
tgaattgaatgggaggaatgttaattcttctataccgatcactgatctggatgttgtaagagtcaagggagataatgtagtgcatatgattgattctgac |
16685634 |
T |
|
| Q |
101 |
tcgctgcttgctgctgcgagtagtggagtttctgttgacgcaggaccggttgctgcaatccgaatgccaatgcttagtgttagcgatttcaaaggtggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685633 |
tcgctgcttgctgctgcgagtagtggagtttctgttgatgcaggaccggttgctgcaatccgaatgccaatgcttagtgttagcgatttcaaaggtggga |
16685534 |
T |
|
| Q |
201 |
cgcctgaggtaacagaagcctgttacgcaatacttgttttggtacttcctagtgaagaggctagatcttggagcaatcaagagcttgagattattaaagt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685533 |
cgcctgaggtaacggaagcctgttacgcaatacttgttttggtacttcctagtgaagaggctagatcttggagcaatcaagagcttgagattattaaagt |
16685434 |
T |
|
| Q |
301 |
tgttgctgatcaggtagccgtgggtctttctcatgccgcgattctcgaagaatcacaacttatgagagagaaattggaggagcgaaatcgagcattgcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685433 |
tgttgctgatcaggtagccgtgggtctttctcatgccgcgattctcgaagaatcacaacttatgagagagaaattggaggagcgaaatcgagcattgcaa |
16685334 |
T |
|
| Q |
401 |
caagagaaaaggaacgctatg |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16685333 |
caagagaaaaggaacgctatg |
16685313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 128 - 401
Target Start/End: Original strand, 32789485 - 32789758
Alignment:
| Q |
128 |
gtttctgttgacgcaggaccggttgctgcaatccgaatgccaatgcttagtgttagcgatttcaaaggtgggacgcctgaggtaacagaagcctgttacg |
227 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||| | ||||| | |||| ||||| || || |||||| |||| | || ||||| | |
|
|
| T |
32789485 |
gtttctggtgacgcaggtccggttgctgcaattcgaatgccaatgttacgtgtttgtaattttaaaggaggaacacctgagctaactcaggcttgttatg |
32789584 |
T |
|
| Q |
228 |
caatacttgttttggtacttcctagtgaagaggctagatcttggagcaatcaagagcttgagattattaaagttgttgctgatcaggtagccgtgggtct |
327 |
Q |
| |
|
||||| | || ||| | ||||| ||||| ||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||||| ||| |
|
|
| T |
32789585 |
caatattggtcttgattcttccggccgaagaacctagatcttggagcaatcaggagctggagataattaaggtggttgctgatcaggtcgccgtggctct |
32789684 |
T |
|
| Q |
328 |
ttctcatgccgcgattctcgaagaatcacaacttatgagagagaaattggaggagcgaaatcgagcattgcaac |
401 |
Q |
| |
|
|| ||||| || ||||| ||||| || ||||| ||||||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
32789685 |
atcacatgctgcaattcttgaagagtctcaactcatgagagagaagttggaagaacgcaatcgagctttgcaac |
32789758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 35451148 - 35451245
Alignment:
| Q |
305 |
gctgatcaggtagccgtgggtctttctcatgccgcgattctcgaagaatcacaacttatgagagagaaattggaggagcgaaatcgagcattgcaaca |
402 |
Q |
| |
|
||||||||||| ||||| | ||||||||||| || |||||||||| || || | |||||||||||| | || |||| ||| |||||||||||||| |
|
|
| T |
35451148 |
gctgatcaggtggccgtagccctttctcatgcatcggttctcgaagagtctcatttaatgagagagaaactcgaagagcaaaaccgagcattgcaaca |
35451245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University