View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8457_low_3 (Length: 364)
Name: NF8457_low_3
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 47349557 - 47349879
Alignment:
| Q |
24 |
catcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
123 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349557 |
catcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
47349656 |
T |
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| Q |
124 |
ccgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
223 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349657 |
ccgtcctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
47349756 |
T |
|
| Q |
224 |
gttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47349757 |
gttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaa---tgttgttggcacgctttgcctttacgctgcaatttgcaa |
47349853 |
T |
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| Q |
324 |
gcatgaacacatttctttgaaatttc |
349 |
Q |
| |
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| T |
47349854 |
gcatgaacacatttctttgaaatttc |
47349879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 326
Target Start/End: Original strand, 47347019 - 47347317
Alignment:
| Q |
25 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgagc |
124 |
Q |
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|||||||| || | |||||| |||||||||| |||||||| ||||| ||||||||||||||||| || | |||||| ||||||||||| || |||| |
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| T |
47347019 |
atcccaaacgcaccgaatctccgccacgtgtcacttcaaaccggtggaaaacactatttaggaccgtttgatctgatcgggaagattaatagtcatgagc |
47347118 |
T |
|
| Q |
125 |
cgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgag |
224 |
Q |
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|||| || ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
47347119 |
cgccgttcacggaggatttaccgcgtttagatgcgccaaatttctattacactcaggaagatattttgtttgaagaaactcaaaagaaagagggtttgag |
47347218 |
T |
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| Q |
225 |
ttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaag |
324 |
Q |
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|||||||||||||||||| | | || |||||||| |||||||| |||||||||||| | |||| | || ||||| |||| ||||||||||||||| |
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| T |
47347219 |
ttggtctgttcatagacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggt---acactttgtgtttatgctgcaatttgcaag |
47347315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 3819190 - 3819069
Alignment:
| Q |
163 |
aatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgagttggtctgttcatagaccccttctcatctttggattct |
262 |
Q |
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||||||||||| || | |||||| | |||||||||||||| |||||||| ||| ||||||||||||||||||| || ||||||||||||||||| | |
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| T |
3819190 |
aatttctattatacacttgaagatgttttgtttgaagaaacaggtaagaaagaaggtgtgagttggtctgttcataggccacttctcatctttggatttt |
3819091 |
T |
|
| Q |
263 |
caccttacagtttgatgaatat |
284 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
3819090 |
caccttacagtatgatgaatat |
3819069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 47338687 - 47338808
Alignment:
| Q |
163 |
aatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgagttggtctgttcatagaccccttctcatctttggattct |
262 |
Q |
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||||||||||| || | |||||| | |||||||||||||| |||||||| || ||||||||||||||||||| || ||||||||||||||||| | |
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| T |
47338687 |
aatttctattatacacttgaagatgttttgtttgaagaaacagggaagaaagaaggcgtgagttggtctgttcataggccacttctcatctttggatttt |
47338786 |
T |
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| Q |
263 |
caccttacagtttgatgaatat |
284 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
47338787 |
caccttacagtatgatgaatat |
47338808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 5391203 - 5391164
Alignment:
| Q |
290 |
ttggcacgctttgcctttacgctgcaatttgcaagcatga |
329 |
Q |
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| T |
5391203 |
ttggcacgctttgtgtttacgctgcaatttgcaagcatga |
5391164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 5399922 - 5399883
Alignment:
| Q |
290 |
ttggcacgctttgcctttacgctgcaatttgcaagcatga |
329 |
Q |
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| T |
5399922 |
ttggcacgctttgtgtttacgctgcaatttgcaagcatga |
5399883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5401520 - 5401451
Alignment:
| Q |
25 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcg |
94 |
Q |
| |
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||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||||| |
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| T |
5401520 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggacccttcg |
5401451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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