View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8457_low_6 (Length: 250)
Name: NF8457_low_6
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 2982741 - 2982513
Alignment:
| Q |
6 |
gtttggtgaaattgtgttaagttcaaccataaattttaatataatattagaacatcttttaagatactttgaagcatatagaattaagtttttaatattg |
105 |
Q |
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| T |
2982741 |
gttttgtgaagttgttttaagttcaaccataaattttaatataatattagaacatcttttaagataccttggagcatatagaaccaagtttttaatattg |
2982642 |
T |
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| Q |
106 |
aatcgctcatcatttatatccaaacatcaacc-cattagtattgagtgtaagagaatattttaaaagtacattgaaaataatatgacttatgcaaatatc |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
2982641 |
gatcgctcatcatttatatccaaacatcaacctaattagtattgagtgtaagagaatattttaagagtacattgaaaataatatgacttaagcaaatatc |
2982542 |
T |
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| Q |
205 |
catgaatattcatcttccaagtcaatttt |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2982541 |
catgaatattcatcttccaagtcaatttt |
2982513 |
T |
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