View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8457_low_7 (Length: 239)
Name: NF8457_low_7
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10750869 - 10751091
Alignment:
| Q |
1 |
tctacaaagaaatcgatcaattgcaaccgattttgtttgagaaagtattccaatttgaaaagtttaatgcactttgtagtggttttgttcagttaggccg |
100 |
Q |
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| T |
10750869 |
tctacaaagaaatcgatcaattgcaaccgattttgtttgagaaagtattccaatttgaaaagtttaatgcactttgtagtggttttgttcagttaggccg |
10750968 |
T |
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| Q |
101 |
gtataacaatgtcttgaatagaacccgagtgcttgaaatgacgaaagggagtggaaggaagtggacattggagagagatttatcacaattgaaggagtat |
200 |
Q |
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| T |
10750969 |
gtataacaatgtcttgaatagaacccgagtgcttgaaatgacgaaagggagtggaaggaagtggacattggagagagatttatcacaattgaaggagtat |
10751068 |
T |
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| Q |
201 |
agtaaaggctcttatgatgatta |
223 |
Q |
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| T |
10751069 |
agtaaaggctcttatgatgatta |
10751091 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 32560450 - 32560538
Alignment:
| Q |
3 |
tacaaagaaatcgatcaattgcaaccgattttgtttgagaaagtattccaatttgaaaagtttaatgcactttgtagtggttttgttca |
91 |
Q |
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| T |
32560450 |
tacaaggaaatcgatcttttacaaccgatttcatttgataaggtgtttcaatttgataaatttaatgaactgtgtagtggttttgttca |
32560538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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