View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8457_low_8 (Length: 236)
Name: NF8457_low_8
Description: NF8457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8457_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27146616 - 27146397
Alignment:
| Q |
1 |
atcaactacttgcagattcattcaatttaaccggtaaccatgggataaggaaacctattagtcttcgaatgtgaaataaaaatcaaatttgatttctaag |
100 |
Q |
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| T |
27146616 |
atcaactacttgcagattcattcaatttaactggtaaccatgggataaggaaacctattagtcttcgaatgtgaaataaaaatcaaatttgatttctaag |
27146517 |
T |
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| Q |
101 |
aatcaccaaaattaattaaattagtcttttttagaatatttttaacaatattttggtcctaaccatgaatctcttccaaccaaagaattgaaggaagcat |
200 |
Q |
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| T |
27146516 |
aatcaccaaaattaattaaattagtcttttttagaatatttttaacaatattttggtcctaaccatggatctcttccaaccaaagaattgaaggaagcat |
27146417 |
T |
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| Q |
201 |
gggtccttttcaccgttctc |
220 |
Q |
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||||||||||||||| |||| |
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| T |
27146416 |
gggtccttttcaccgatctc |
27146397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 27156758 - 27156666
Alignment:
| Q |
4 |
aactacttgcagattcattcaatttaaccggtaaccatgggataaggaaacct-attagtcttcgaatgtgaaataaaaatcaaatttgattt |
95 |
Q |
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| T |
27156758 |
aactacctgaagattcattcaatttaattggtaaccatgggatacggaaacctgattagttttcgaaagtgaaataaaaatcaaatttaattt |
27156666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 27215775 - 27215701
Alignment:
| Q |
58 |
ttagtcttcgaatgtgaaataaaaa-tcaaatttgatttctaagaatcaccaaaattaattaaattagtcttttt |
131 |
Q |
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| T |
27215775 |
ttagtctttgaaagtgaaataaaaaatcaaatttggtttcttagaatcaccaaaataaattaaattagttttttt |
27215701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 27133495 - 27133584
Alignment:
| Q |
45 |
ataaggaaacctatt-agtcttcgaatgtgaaataa-aaatcaaatttgatttctaagaatcaccaaaattaattaaattagtctttttt |
132 |
Q |
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||||||||||||||| |||||||||| ||||||| |||| ||||||| ||||||||||||||||||| ||| | || ||||||||||| |
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| T |
27133495 |
ataaggaaacctatttagtcttcgaaaatgaaataggaaataaaatttggtttctaagaatcaccaaaaataaattaaatagtctttttt |
27133584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 27164094 - 27163982
Alignment:
| Q |
105 |
accaaaattaattaaattagtcttt---tttagaata-tttttaacaatattttggtcct-aaccatgaatctcttccaaccaaagaattgaaggaagca |
199 |
Q |
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|||||||| ||||||| |||||||| || |||||| ||||||||||||||||| |||| ||||||| |||| |||||| |||||| | ||||||||| |
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| T |
27164094 |
accaaaatgaattaaagtagtctttgtgttcagaataatttttaacaatattttgctcctaaaccatgcatctgttccaagcaaagagtaaaaggaagca |
27163995 |
T |
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| Q |
200 |
tgggtccttttca |
212 |
Q |
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| T |
27163994 |
tgagtcctcttca |
27163982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 27170718 - 27170644
Alignment:
| Q |
140 |
ttttaacaatattttggtcctaa-ccatgaatctcttccaaccaaagaattgaaggaagcatgggtccttttcac |
213 |
Q |
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|||| |||||||||| |||||| ||||| |||| ||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
27170718 |
ttttgacaatattttcatcctaaaccatgcatctattccaaccaaagaatagaaggaaacatgggtctttttcac |
27170644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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