View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_high_5 (Length: 392)
Name: NF8458_high_5
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 2078448 - 2078287
Alignment:
| Q |
1 |
ttgtgtgaaaaattgaagtgtttggtgataaagaccctttgaaactaaggtttttatatggtctgaaggggaatgtgtggggaccacactggataggaat |
100 |
Q |
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| T |
2078448 |
ttgtgtgaaaaattgaagtgtttggtgataaagacccattgaaactaaggtttttatatggtctgaaggggaatgtgtggggaccacactggataggaat |
2078349 |
T |
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| Q |
101 |
cttctggtgatgaatgagatgcaattgcattgcagaggattcaaattcagactcagaatcat |
162 |
Q |
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| T |
2078348 |
cttctggtgatgaatgagatgcaattgcattggagaggattcaaattcagactcagaatcat |
2078287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 192 - 376
Target Start/End: Complemental strand, 2078257 - 2078074
Alignment:
| Q |
192 |
gttttttgagaagaaatttaatacttataaataagatacttaaataatggttaaaattagaatnnnnnnnnnctatacaaaataattcaaaaaatatgac |
291 |
Q |
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| T |
2078257 |
gttttttgagaagaaatttaatacttataaataagatacttaaataatggttaaaattagaataaaaaaaaactatacaaa-taattcaaaaaatatgac |
2078159 |
T |
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| Q |
292 |
tccaacatgtacaattgatgcttcttctatttgaagtgatggttcacatgtttcatcaatcaagtttaccagaccatcaattaat |
376 |
Q |
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| T |
2078158 |
tccaacatgtacaattgatgcttcttctatttgaagtgatggttcacatgtttcatcaatcaagtttaccagaccatcaattaat |
2078074 |
T |
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