View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_10 (Length: 293)
Name: NF8458_low_10
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26145025 - 26144894
Alignment:
| Q |
1 |
caaaataaatagaaaaagaagtggtannnnnnncgtcggtttatgccgtgtaatggaagttataaattgactagagatacccaaaactaaatcgttacta |
100 |
Q |
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| T |
26145025 |
caaaataaatagaaaaagaagtggtatttt---cgtcggtttatgccgtgtaacggaagttataaattgactagagatacccaaaactaaatcgttacta |
26144929 |
T |
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| Q |
101 |
aaccaaccaacgaacgagtgaaaaaag-aactctgattc |
138 |
Q |
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| T |
26144928 |
aaccaacca----acgagtgaaaaaagcaactctgattc |
26144894 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 26144817 - 26144751
Alignment:
| Q |
216 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctgttcttctc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26144817 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctgttcttctc |
26144751 |
T |
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