View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_11 (Length: 252)
Name: NF8458_low_11
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 38452109 - 38452292
Alignment:
| Q |
57 |
aatcatgatgaatagtttgaagtctaaactaaacagaaaatgtgaataagatgtttgtcacctctaacattcaggaatggagctagaaggggaccaacag |
156 |
Q |
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| T |
38452109 |
aatcatgatgaatagtttgaagtctaaactaaacagaaaatgtgaataagatgtttgtcacctctaacattcaggaatggagctagaaggggaccaacag |
38452208 |
T |
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| Q |
157 |
tggccatgctgagatgattttgctagtgagtaataataagataaatgaaataaagtgtaacaagttaagatgtattgagaataa |
240 |
Q |
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| T |
38452209 |
tggccatgctgagatgattttgctagtgaataataataagataaatgaaataaagtgtaacaagttaagatgtattaagaataa |
38452292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 38634460 - 38634384
Alignment:
| Q |
161 |
catgctgagatgattttgctagtgagtaataataagataaatgaaataaagtgtaacaagttaagatgtattgagaataa |
240 |
Q |
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| T |
38634460 |
catgctgagatgtttttgcttgtga---ataataagataaatgaaataaagtgtaacaagttaagatgttttgaaaataa |
38634384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 38634563 - 38634489
Alignment:
| Q |
57 |
aatcatgatgaatagtttgaagtctaaactaaacagaaaa--tgtgaataagatgtttgtcacctctaacattca |
129 |
Q |
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| T |
38634563 |
aatcatgatgaatgttttgaagtctaaactaaatggaaaaaatgtgaataagatgtttgtcacctctaacattca |
38634489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38452039 - 38452074
Alignment:
| Q |
1 |
taaaaatcaacaatcacacaaccaactaactataag |
36 |
Q |
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| T |
38452039 |
taaaaatcaacaatcacacaaccaactaactataag |
38452074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 39851567 - 39851502
Alignment:
| Q |
57 |
aatcatgatgaatagtttgaagtctaaactaaacagaaaatgtgaataagatgtttgtcacctctaa |
123 |
Q |
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||||||||||||| |||||||||| ||| |||| ||||||||||||||||||| |||||| ||||| |
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| T |
39851567 |
aatcatgatgaatgttttgaagtctcaacaaaac-gaaaatgtgaataagatgtctgtcacttctaa |
39851502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 39851459 - 39851407
Alignment:
| Q |
188 |
aataataagataaatgaaataaagtgtaacaagttaagatgtattgagaataa |
240 |
Q |
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| T |
39851459 |
aataataagataaataaaataatatgtaacaagttaagatgttatgagaataa |
39851407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 39851651 - 39851620
Alignment:
| Q |
1 |
taaaaatcaacaatcacacaaccaactaacta |
32 |
Q |
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| T |
39851651 |
taaaaatcaacaatcacacaaccaactaacta |
39851620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 44476076 - 44476023
Alignment:
| Q |
61 |
atgatgaatagtttgaagtctaaactaaacagaaaatgtgaataagatgtttgt |
114 |
Q |
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||||||||| |||||||||| |||||||| |||||| |||||||||||||||| |
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| T |
44476076 |
atgatgaatgatttgaagtctcaactaaacggaaaatatgaataagatgtttgt |
44476023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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