View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8458_low_12 (Length: 245)

Name: NF8458_low_12
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8458_low_12
NF8458_low_12
[»] chr4 (16 HSPs)
chr4 (1-226)||(46015395-46015616)
chr4 (84-226)||(46020627-46020767)
chr4 (143-226)||(46246223-46246306)
chr4 (131-226)||(46021298-46021393)
chr4 (143-226)||(46015941-46016025)
chr4 (143-195)||(46020871-46020923)
chr4 (132-226)||(46303766-46303860)
chr4 (152-221)||(14320607-14320676)
chr4 (152-221)||(14321775-14321844)
chr4 (149-226)||(41074460-41074537)
chr4 (143-222)||(46027989-46028069)
chr4 (143-186)||(41074984-41075027)
chr4 (157-186)||(46307281-46307310)
chr4 (33-103)||(46427816-46427888)
chr4 (143-179)||(46304203-46304239)
chr4 (171-226)||(46428303-46428359)
[»] chr1 (4 HSPs)
chr1 (143-226)||(3802619-3802702)
chr1 (143-226)||(3802180-3802263)
chr1 (131-218)||(50668544-50668631)
chr1 (131-185)||(50668115-50668169)
[»] chr8 (2 HSPs)
chr8 (143-226)||(4522907-4522990)
chr8 (143-226)||(4525280-4525361)
[»] scaffold0079 (1 HSPs)
scaffold0079 (131-181)||(6701-6751)
[»] scaffold0384 (2 HSPs)
scaffold0384 (160-211)||(5721-5772)
scaffold0384 (131-181)||(4140-4190)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46015616 - 46015395
Alignment:
Q  1 tttaatatggttgattgaaagttaaaaaaggaacaaggcacaacaacaatagcaacgaacagaatagaagaacggcaatggatataataatagagaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  46015616 tttaatatggttgattgaaagttaaaaaaggaacaaggcacaacaacaatagcaactaacagaatagaagaacggcattggatataataatagagaatga 46015517  T
Q  101 aatggactgaatcaatcaagatnnnnnnnncataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaa 200  Q
    |||||||||||    |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015516 aatggactgaa----tcaagataaaaaaaacataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaa 46015421  T
Q  201 gaattttatcttcgcatggttttaaa 226  Q
    ||||||||||||| ||||||||||||    
T  46015420 gaattttatcttcacatggttttaaa 46015395  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 46020767 - 46020627
Alignment:
Q  84 ataataatagagaatgaaatggactgaatcaatcaagatnnnnnnnncataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcata 183  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46020767 ataataatagagaatgaaatggactgaatcaatcaagataataaa--cataaccaaattatgtgcatattaacactcaatcaagaggttgcattttcata 46020670  T
Q  184 aaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||| |||||||||| ||||||| ||||||| ||||||||||||    
T  46020669 aaaaaggaaaacaaaaagaattgtatcttcacatggttttaaa 46020627  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 46246223 - 46246306
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||| ||||||| || |||||||||    
T  46246223 atgtgcatattaacattcaatcaagaggttgcattttcataaaaaaggaaaaaaaaaagaattgtatcttcacaaggttttaaa 46246306  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 46021393 - 46021298
Alignment:
Q  131 cataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||  ||||||| | |||||  ||| |||||||    
T  46021393 cataaccaacttatgtgcatattaacattcaatcaagaggttgcatttctataaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaa 46021298  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 46016025 - 46015941
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcat-aaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||||| ||||||||||||||||||||  |||||||||||| ||||||||||| ||| || |||| ||| ||| ||| ||||||||    
T  46016025 atgtgtatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaa 46015941  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 46020923 - 46020871
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaac 195  Q
    |||||||| |||||||||||||||||  ||| |||||||||||||||||||||    
T  46020923 atgtgcattttaacactcaatcaagaacttggattttcataaaacaggaaaac 46020871  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 46303766 - 46303860
Alignment:
Q  132 ataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    |||||||| | ||||||||||||||||  ||||||||| ||||||| | |||||| |||||| ||  ||||||| | ||||| ||| ||||||||    
T  46303766 ataaccaacttatgtgcatattaacacaaaatcaagagcttgcattgtaataaaataggaaagcataaagaattgtgtcttcacatagttttaaa 46303860  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 14320676 - 14320607
Alignment:
Q  152 ttaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggtt 221  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||| ||| | ||||| ||||||| |||||||    
T  14320676 ttaacaatcaatcatgagattgcattctcataaaacaggaaagcaaaatgaattgtatcttcacatggtt 14320607  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 14321844 - 14321775
Alignment:
Q  152 ttaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggtt 221  Q
    |||||| ||||||| ||| |||||||||||| |||||||||| ||| | ||||| ||||||| |||||||    
T  14321844 ttaacaatcaatcatgagattgcattttcatgaaacaggaaagcaaaatgaattgtatcttcccatggtt 14321775  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 41074537 - 41074460
Alignment:
Q  149 atattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||||||||||| ||||||||  | |||||||| |||||||  ||| ||| ||||||| ||||||| ||||||||||||    
T  41074537 atattaacactaaatcaagacctagcattttcttaaaacattaaagcaaaaagaattgtatcttcacatggttttaaa 41074460  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 46028069 - 46027989
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcat-aaaacaggaaaacaacaagaattttatcttcgcatggttt 222  Q
    |||||||||||||||||||| |||||  |||||| ||||| ||||||||||| ||| || |||| ||||||| ||| ||||    
T  46028069 atgtgcatattaacactcaaacaagaacttgcatcttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt 46027989  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 41075027 - 41074984
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaa 186  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||    
T  41075027 atgtgcatattaacactcaatcaagagctagcattttcacaaaa 41074984  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 46307281 - 46307310
Alignment:
Q  157 actcaatcaagaggttgcattttcataaaa 186  Q
    ||||||||||||||||||||||||||||||    
T  46307281 actcaatcaagaggttgcattttcataaaa 46307310  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 46427888 - 46427816
Alignment:
Q  33 acaaggcaca--acaacaatagcaacgaacagaatagaagaacggcaatggatataataatagagaatgaaat 103  Q
    ||||||||||  |||||| ||||||| |||||||||||||| ||| |  |||||||||||||| ||| |||||    
T  46427888 acaaggcacagcacaacagtagcaacaaacagaatagaagaccggtataggatataataatagggaaagaaat 46427816  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 46304203 - 46304239
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcatttt 179  Q
    |||||||||||||||||||| |||||| |||||||||    
T  46304203 atgtgcatattaacactcaaacaagagcttgcatttt 46304239  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 46428359 - 46428303
Alignment:
Q  171 ttgcattttcataaaa-caggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    |||||||||||||||| ||||||| ||| || |||| ||||||||||| ||||||||    
T  46428359 ttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaa 46428303  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 3802619 - 3802702
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| |||| |||||||    
T  3802619 atgtgcatattaacactcaatcaagaggttgcattttcataaaataggaaaacaaaacgaattgtatcttcacatgattttaaa 3802702  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 3802180 - 3802263
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    |||||||||||||||||||| |||||||||| |||||||||||| |||||| ||| |  |||| || |||| ||||||||||||    
T  3802180 atgtgcatattaacactcaaacaagaggttgtattttcataaaataggaaagcaaaactaattgtagcttcacatggttttaaa 3802263  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 50668631 - 50668544
Alignment:
Q  131 cataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatg 218  Q
    ||||||||| | |||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| ||||||| ||| ||| ||||    
T  50668631 cataaccaacttatgtgcatattaacactcgatcaagagcttgcattttcataaagcagtaaagcaaaaagaattctattttcacatg 50668544  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 50668169 - 50668115
Alignment:
Q  131 cataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttcataaa 185  Q
    ||||||||| | | ||||||||||||| ||||| ||||| |||||||||||||||    
T  50668169 cataaccaacttacgtgcatattaacattcaattaagagcttgcattttcataaa 50668115  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 4522907 - 4522990
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||| | ||||| ||||||||||||    
T  4522907 atgtgcattttaacactcaatcaagagcttgaattttcataaaacaggaaagcaaaaagaattgtgtcttcacatggttttaaa 4522990  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 4525280 - 4525361
Alignment:
Q  143 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcgcatggttttaaa 226  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||| |||| ||| |||||  || ||||| ||||||||||||    
T  4525280 atgtgcatattaacactcaatcaagagcttgatttttcataaaacaagaaagcaaaaagaa--ttgtcttcacatggttttaaa 4525361  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 6701 - 6751
Alignment:
Q  131 cataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttca 181  Q
    ||||||||| | ||||||||||||||||||||||||||| | |||||||||    
T  6701 cataaccaacttatgtgcatattaacactcaatcaagagctagcattttca 6751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 5721 - 5772
Alignment:
Q  160 caatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatct 211  Q
    |||||||||| || ||||||||||||||| |||||||| ||||||| |||||    
T  5721 caatcaagagttttcattttcataaaacaagaaaacaaaaagaattgtatct 5772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 4140 - 4190
Alignment:
Q  131 cataaccaaatcatgtgcatattaacactcaatcaagaggttgcattttca 181  Q
    ||||||||| | |||||||||||||||||||||| |||| | |||||||||    
T  4140 cataaccaacttatgtgcatattaacactcaatctagagctagcattttca 4190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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