View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_13 (Length: 242)
Name: NF8458_low_13
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 38793155 - 38792932
Alignment:
| Q |
19 |
agtttcttgaaagagtatttgaaaattgattttgttgctggtagagagctgaaaatggtttgtggttactatgttgggttgatggatgagacaaaaaatt |
118 |
Q |
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| T |
38793155 |
agtttcttgaaagagtatttgaaaattgattttgttgctggtagagagctgaaaatggtttgtggttactatgttgggttgatggatgagacaaaaaatt |
38793056 |
T |
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| Q |
119 |
tgcatgctttgaaacaagttcatgaagggaaaggctctttagatatgattggtattacaagattcaataacattcatgatgatgaaattttctcttcttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793055 |
tgcatgctttgaaacaagttcatgaagggaaaggctctttagatatgattggtattacaagattcaataacattcatgatgatgaaattttctcttcttg |
38792956 |
T |
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| Q |
219 |
caaggtttgtttttcttattttct |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
38792955 |
caaggtttgtttttcttattttct |
38792932 |
T |
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