View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_14 (Length: 240)
Name: NF8458_low_14
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26145048 - 26145252
Alignment:
| Q |
1 |
aaattggaagaggggccacataataatctcacaagaagcttctttcaatattttcaatttttctcgtgtattgaaataatttttgtatttacaattagga |
100 |
Q |
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| T |
26145048 |
aaattggaggaggggccacataataatctcacaagaagcttctttcaatattttcaatttttctcgtgtattgaaatagtttttgtatttacaattagga |
26145147 |
T |
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| Q |
101 |
aggttttttacaagaattattcttcatcttnnnnnnnnnnngattattcatcaattttgtacttcagtttagttctactcgaatcagcgtaacaccaata |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
26145148 |
aggttttttacaagaattattcttcatcttaaaaaaaaa---aatattcttcaattttgtggttcagtttagttctactcgaatcagcgtaacattaata |
26145244 |
T |
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| Q |
201 |
ttgaagaa |
208 |
Q |
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|| ||||| |
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| T |
26145245 |
ttaaagaa |
26145252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 26145675 - 26145730
Alignment:
| Q |
171 |
agttctactcgaatcagcgtaacaccaatattgaagaatccattatggtatttttt |
226 |
Q |
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| T |
26145675 |
agttctactcggatcagcgtaacaccaatattcaagaatccattatggtatttttt |
26145730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 26145511 - 26145563
Alignment:
| Q |
157 |
ttgtacttcagtttagttctactcgaatcagcgtaacaccaatattgaagaat |
209 |
Q |
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| T |
26145511 |
ttgtatttcagtttagttctactcggatcagcgtaacaccaatattgaagaat |
26145563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 26145304 - 26145259
Alignment:
| Q |
169 |
ttagttctactcgaatcagcgtaacaccaatattgaagaatccatt |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26145304 |
ttagttctactcggatcagcgtaacaccaatattgaagaatccatt |
26145259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 26145462 - 26145411
Alignment:
| Q |
166 |
agtttagttctactcgaatcagcgtaacaccaatattgaagaatccattatg |
217 |
Q |
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||||||||| |||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
26145462 |
agtttagttttactcggatcaacgtcacaccaatattgaagaatccattatg |
26145411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 26145356 - 26145407
Alignment:
| Q |
157 |
ttgtacttcagtttagttctactcgaatcagcgtaacaccaatattgaagaa |
208 |
Q |
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||||| |||||||||||| ||||||||| || ||| |||||||||||||||| |
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| T |
26145356 |
ttgtagttcagtttagttatactcgaattagtgtagcaccaatattgaagaa |
26145407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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