View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_15 (Length: 239)
Name: NF8458_low_15
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 38845871 - 38845962
Alignment:
| Q |
133 |
tactttgataccactacttatgatcacatacgcatgcgtgttgtgattttccaagaaaggttaagatgattttgtgtcctgggcaacttttt |
224 |
Q |
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| T |
38845871 |
tactttgataccactgcttatgatcacatacgcatgcgtgttgtgattttccaagaaaggttaagatgattttgtgtcctgggcaacttttt |
38845962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38845087 - 38845170
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctcttatattttctttcaatattttttccacatgtcataattgtttgtgtgtca |
84 |
Q |
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| T |
38845087 |
ttttagtaatttctcatcacatcatcacccctcttatcttttctttcaatattttttccacatgtcacaattgtgtgtgtgtca |
38845170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 52191264 - 52191391
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatca-cccctcttatattttctttcaatattttttccacatgtcataattgtttgtg--tgtcaaaa--tacatgcc |
95 |
Q |
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| T |
52191264 |
ttttagtaatttcgcatcacatcatcatctcctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgcc |
52191363 |
T |
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| Q |
96 |
acataaggtggttcatgtataagtgctc |
123 |
Q |
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| T |
52191364 |
acctaaggtggtccatgtataagggctc |
52191391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31800685 - 31800606
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctctt-atattttctttcaatattttttccacatgtcataattgtttgtg |
79 |
Q |
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| T |
31800685 |
ttttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtgtg |
31800606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 41003915 - 41003983
Alignment:
| Q |
2 |
tttagtaatttctcatcacatcatcacccctctt-atattttctttcaatattttttccacatgtcataa |
70 |
Q |
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| T |
41003915 |
tttagtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacatgtcataa |
41003983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5811227 - 5811294
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctctt-atattttctttcaatattttttccacatgtca |
67 |
Q |
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| T |
5811227 |
ttttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtca |
5811294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23980258 - 23980191
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctctt-atattttctttcaatattttttccacatgtca |
67 |
Q |
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| T |
23980258 |
ttttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtca |
23980191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13108274 - 13108208
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctcttatattttctttcaatattttttccacatgtca |
67 |
Q |
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| T |
13108274 |
ttttagtaatttcacatcacatcctcacccctttcatctcttctttcaacgtttttgccacatgtca |
13108208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30735560 - 30735626
Alignment:
| Q |
1 |
ttttagtaatttctcatcacatcatcacccctcttatattttctttcaatattttttccacatgtca |
67 |
Q |
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| T |
30735560 |
ttttagtaatttaacatcatatcatcaccctttttatatcttctttcaatgtttttgccacgtgtca |
30735626 |
T |
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