View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_2 (Length: 616)
Name: NF8458_low_2
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 608
Target Start/End: Original strand, 41089702 - 41090303
Alignment:
| Q |
20 |
ataacgtcatataaactactttactaaattaagacaaatttcctacttttgaaataattcgatatcatgatccaacatttctcatatttaacttttcaat |
119 |
Q |
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| T |
41089702 |
ataatgtcatataaactactttactaaattaagacaaatttcctacttttgaaataatacgatatcatgatccaacatttctcatatttaagttttcaat |
41089801 |
T |
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| Q |
120 |
ttatttacttaatttagcagaatcacagctttctattgaattaatatcattcaaaagtgggggcttgtgcttgtaacaagtaactgaagagaatagaccg |
219 |
Q |
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| T |
41089802 |
ttatttacttaatttagcagcatcacagctttctattgaattaatatcattcaaaagtgggggcttgtgcttgtaacaagtaacagaagagaatagaccg |
41089901 |
T |
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| Q |
220 |
aatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttggtcacaatcac-nnnnnnnnnnnnnngaataaatgttaacgatcacat |
318 |
Q |
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| T |
41089902 |
aatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttggtcacaatcactttttttttttttttgaataaatgttaacgatcacat |
41090001 |
T |
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| Q |
319 |
ttatgttggcatatgtggtagggtgtttccatttgatcaacgtctaaaaatacttggaaatatgaatgatttataaac------------aatgctttaa |
406 |
Q |
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| T |
41090002 |
ttatgttggcatatgtggtagggtgtttctatttgctcaacgtctaaaaatacttcgaaatatgaatgatttataaacaatgcttatgaaaatgctttaa |
41090101 |
T |
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| Q |
407 |
attaatcccttccagatcaatgacaaggatgtggaaggagagataaggccaagaaaccatttttggcatatatattcattgttttgctgacttcttccta |
506 |
Q |
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| T |
41090102 |
attaatcccttccagatcaatgacaaggatgtggaaggagagataaggccaagaaaccatttttggcatatatattcattgttttgctgacttcttccta |
41090201 |
T |
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| Q |
507 |
gctgcattgaattggcagatctatagactacacatgtttttgtttatgaataccagcaacattcatttgggatttcgatcctcggctgccaaactctctg |
606 |
Q |
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| T |
41090202 |
gctgcattgaattcgcagatctatagactacacatgtttttgtttatgaatagcagcaacattcatttgggatttcgatcctcggctgccaaactctttg |
41090301 |
T |
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| Q |
607 |
ct |
608 |
Q |
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| T |
41090302 |
ct |
41090303 |
T |
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