View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8458_low_3 (Length: 527)

Name: NF8458_low_3
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8458_low_3
NF8458_low_3
[»] chr4 (19 HSPs)
chr4 (1-378)||(46015616-46015993)
chr4 (219-378)||(46428196-46428355)
chr4 (219-375)||(46027879-46028034)
chr4 (15-173)||(46027579-46027737)
chr4 (20-175)||(46427946-46428095)
chr4 (379-434)||(46016023-46016078)
chr4 (383-437)||(46428384-46428438)
chr4 (281-369)||(46303817-46303905)
chr4 (227-369)||(46021197-46021341)
chr4 (282-378)||(46015351-46015446)
chr4 (282-378)||(46020583-46020678)
chr4 (279-353)||(46020784-46020861)
chr4 (379-434)||(46020921-46020976)
chr4 (1-96)||(46021051-46021144)
chr4 (282-378)||(46246255-46246350)
chr4 (1-57)||(46428529-46428584)
chr4 (312-361)||(41074446-41074495)
chr4 (381-438)||(46028078-46028135)
chr4 (293-369)||(14320569-14320645)
[»] chr8 (3 HSPs)
chr8 (301-378)||(4522939-4523015)
chr8 (4-50)||(4525565-4525611)
chr8 (284-369)||(4525320-4525403)
[»] chr1 (8 HSPs)
chr1 (232-340)||(3804121-3804229)
chr1 (247-364)||(3801740-3801859)
chr1 (263-378)||(3802212-3802326)
chr1 (381-434)||(50668628-50668681)
chr1 (7-63)||(3801975-3802031)
chr1 (293-356)||(50668040-50668103)
chr1 (1-62)||(50667487-50667548)
chr1 (272-378)||(3802651-3802753)
[»] scaffold0079 (1 HSPs)
scaffold0079 (299-378)||(7948-8026)
[»] scaffold0384 (1 HSPs)
scaffold0384 (301-378)||(5736-5812)
[»] chr3 (1 HSPs)
chr3 (273-375)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 46015616 - 46015993
Alignment:
Q  1 aataacctcaccctttcattttttatttgatcgaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015616 aataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaac 46015715  T
Q  101 aaaaggtaagacgcacaaggagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgccacagagcgagagaaacagtttattgc 200  Q
    |||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  46015716 aaaaagtaagacgcatagggagaaagtttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgccgcagagcgagagaaacagtttcttgc 46015815  T
Q  201 taataatnnnnnnngagcaagtaagttttactcaatgctgtaatggtgtattgatatgttccttgcagttatattaatttgggttaacatgtacttcgtc 300  Q
    |||||||       ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46015816 taataataaaaaaagagcaagtaagttttactcaatgctgtaatgatgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtc 46015915  T
Q  301 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015916 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 46015993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 219 - 378
Target Start/End: Original strand, 46428196 - 46428355
Alignment:
Q  219 aagtaagttttactcaatgctgtaatggtgtattgatatgttccttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttaca 318  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  46428196 aagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttaca 46428295  T
Q  319 tcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46428296 ttttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 46428355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 219 - 375
Target Start/End: Original strand, 46027879 - 46028034
Alignment:
Q  219 aagtaagttttactcaatgctgtaatggtgtattgatatgttccttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  46027879 aagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgtccatctgttatgatttaaa 46027978  T
Q  319 tcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaa 375  Q
    | |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  46027979 ttttgacttt-aaactatgtgaagatacaattatttttgctttcctgtttttatgaa 46028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 46027579 - 46027737
Alignment:
Q  15 ttcattttttatttgatcgaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaggtaagacgc 114  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| ||||| |||||| ||    
T  46027579 ttcatattttatttgatcaaaacattaaacagaatttgctgaggagcgttgtttaattacaaacaaaaatgaagttgctatgaagcaaaaagtaagaagc 46027678  T
Q  115 acaaggagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgc 173  Q
    |||| |||||| |||||| ||| | ||||||||||||||||||||||||||||||||||    
T  46027679 acaaagagaaagtttcgtgtggtgtatgttcgtcgtgcaagaaacaagaacgaagttgc 46027737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 46427946 - 46428095
Alignment:
Q  20 tttttatttgatcgaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaggtaagacgcacaag 119  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||  || || |||||| ||||||     
T  46427946 tttttatttgatcaaaacattaaacagaatttgctaaagagcattgtttaaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaa 46428045  T
Q  120 gagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgcca 175  Q
    |||||| ||||||       ||||||||||||||||||||||||||||||||||||    
T  46428046 gagaaagtttcgt------gatgttcgtcgtgcaagaaacaagaacgaagttgcca 46428095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 46016023 - 46016078
Alignment:
Q  379 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016023 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 46016078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 46428384 - 46428438
Alignment:
Q  383 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428384 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 46428438  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 46303905 - 46303817
Alignment:
Q  281 gggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 369  Q
    ||||||||||| | ||| |||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||||||| ||||    
T  46303905 gggttaacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaagacacaattctttatgctttcctatttt 46303817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 46021197 - 46021341
Alignment:
Q  227 tttactcaatgctgtaatggtgtattgat----atgttccttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatctt 322  Q
    ||||||||||||||||||| |||||| ||    || ||  ||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||| |  ||    
T  46021197 tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttaga--tt 46021294  T
Q  323 gactttaaaactatgtgaacatacaattatttttgctttcctgtttt 369  Q
    ||||||||||  || |||| | |||||| ||| ||||||||||||||    
T  46021295 gactttaaaatcatttgaagacacaattctttctgctttcctgtttt 46021341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 46015351 - 46015446
Alignment:
Q  282 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||| |||||||| ||||||| ||| |||| || ||| ||||||| ||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaat 46015446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 46020583 - 46020678
Alignment:
Q  282 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    |||||||||| ||||  ||||||||||||||||||| |  ||| |||||||| ||||||| |||||||| |||||| |||||| |||||||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaat 46020678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 46020784 - 46020861
Alignment:
Q  279 ttgggttaacatgtacttcgt---ccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatt 353  Q
    ||||||||||||||||| | |   |||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  46020784 ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattatt 46020861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 46020921 - 46020976
Alignment:
Q  379 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 434  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  46020921 catatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct 46020976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 46021051 - 46021144
Alignment:
Q  1 aataacctcaccctttcattttttatttgatcgaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaag 96  Q
    ||||||||||||  ||||||| |||||| ||  ||||||||||||||||||| |||| ||| | ||| ||| |  |||||||||||||||| ||||    
T  46021051 aataacctcacc--ttcatttcttatttcataaaaacattaaacagaatttggtaagaagcgtagttcaaaaaacaacaaaaatgaagttggtaag 46021144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 46246350 - 46246255
Alignment:
Q  282 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    |||||||||| ||||  ||||||||||||||||||| |  | | ||||||||  |||||| |||||||| |||||  |||||| |||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaat 46246255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 46428529 - 46428584
Alignment:
Q  1 aataacctcaccctttcattttttatttgatcgaaacattaaacagaatttgctaag 57  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||||| ||||    
T  46428529 aataacctcaccctt-catttcttaattgatcaaaacattaaacagaatttggtaag 46428584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 41074446 - 41074495
Alignment:
Q  312 atttacatcttgactttaaaactatgtgaacatacaattatttttgcttt 361  Q
    ||||| || ||||||||||||| ||||||| |||||||| ||||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgcttt 41074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 46028078 - 46028135
Alignment:
Q  381 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatta 438  Q
    ||||||||| |||| || |||||||  |||| |||||| |||||||||||||||||||    
T  46028078 tatgtttattttgctatggttgccatacttgtgaaatttagcccatttcattctatta 46028135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 14320569 - 14320645
Alignment:
Q  293 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 369  Q
    ||||| ||||| ||| |||||||| || || ||| || ||| ||||||| ||||||||  |||||||||||||||||    
T  14320569 acttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctgtttt 14320645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 4523015 - 4522939
Alignment:
Q  301 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    |||||||||||||||| || ||||||||||||| ||||||| | |||||| |||||||||||||| ||||||||||||    
T  4523015 catctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaat 4522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 4525611 - 4525565
Alignment:
Q  4 aacctcaccctttcattttttatttgatcgaaacattaaacagaatt 50  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||    
T  4525611 aacctcaccctttcatttcttatttgataaaaacattaaacagaatt 4525565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 4525403 - 4525320
Alignment:
Q  284 ttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 369  Q
    |||| ||| ||||| ||||||||||||||| ||  | ||||||||||||| ||||||  | |||||| ||||||||||| ||||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtga--agacaattctttttgctttcttgtttt 4525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 3804229 - 3804121
Alignment:
Q  232 tcaatgctgtaatggtgtattgatatgttccttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaa 331  Q
    |||||| ||| ||| |||||| |||||||| ||||  | |  ||| |||||||||||||| ||||| |||||||||||||||||| || |||||||||||    
T  3804229 tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa 3804130  T
Q  332 actatgtga 340  Q
    || ||||||    
T  3804129 accatgtga 3804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 3801859 - 3801740
Alignment:
Q  247 tgtattgatatgttccttgcagttatattaatttgggtt--aacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacat 344  Q
    |||||| ||| |||| ||||||| | |||| |||||| |  |||||| | ||| |||||||||||||||||| || ||||||||||||| ||||||| |     
T  3801859 tgtattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagac 3801760  T
Q  345 acaattatttttgctttcct 364  Q
    |||||| ||| |||||||||    
T  3801759 acaattctttatgctttcct 3801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 3802326 - 3802212
Alignment:
Q  263 ttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttc 362  Q
    |||| |||| ||||||||||  ||| ||| | ||| | ||| |||||||||||| || | ||||||||||| |||||||  |||||||| ||||||||||    
T  3802326 ttgcggttaaattaatttggcgtaatatgcatttctttcatatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttc 3802227  T
Q  363 ctgtttttatgaaaat 378  Q
    ||  ||||||||||||    
T  3802226 ct-attttatgaaaat 3802212  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 50668628 - 50668681
Alignment:
Q  381 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 434  Q
    |||||||||||||| ||||||| ||| ||||| ||||| |||||||||||||||    
T  50668628 tatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct 50668681  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 3802031 - 3801975
Alignment:
Q  7 ctcaccctttcattttttatttgatcgaaacattaaacagaatttgctaaggagcat 63  Q
    ||||||||||  ||| |||||||||| ||||||||| ||||||||||||| ||||||    
T  3802031 ctcacccttttgtttcttatttgatcaaaacattaatcagaatttgctaaagagcat 3801975  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 50668040 - 50668103
Alignment:
Q  293 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattattttt 356  Q
    ||||||||||| ||| |||||||| || ||||||||| ||| ||||||| |||||||| |||||    
T  50668040 acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttt 50668103  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50667487 - 50667548
Alignment:
Q  1 aataacctcaccctttcattttttatttgatcgaaacattaaacagaatttgctaaggagca 62  Q
    |||| ||||||||||| |||| |||||||||| ||||| ||||  ||| |||||||||||||    
T  50667487 aatatcctcaccctttgatttcttatttgatcaaaacaataaatcgaagttgctaaggagca 50667548  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 378
Target Start/End: Complemental strand, 3802753 - 3802651
Alignment:
Q  272 tattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgttttta 371  Q
    |||||||||||| || |||| ||||| ||||| ||||||   ||| || ||||||||||||  ||||||| ||||||||  ||||| ||||||  |||||    
T  3802753 tattaatttgggctagcatgcacttcttccatttgttat---ttagattttgactttaaaatcatgtgaagatacaattcgttttgttttcct-atttta 3802658  T
Q  372 tgaaaat 378  Q
    |||||||    
T  3802657 tgaaaat 3802651  T

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Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 8026 - 7948
Alignment:
Q  299 tccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    ||||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  8026 tccatctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 7948  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 5812 - 5736
Alignment:
Q  301 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 378  Q
    ||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  5812 catctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 5736  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 52806467 - 52806365
Alignment:
Q  273 attaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttat 372  Q
    ||||| |||||||||| || | | | ||||||| | | |||||| || ||||||||| ||| ||||||| || ||||| ||||| ||||| |||||||||    
T  52806467 attaacttgggttaacttgcattccttccatctttcacgatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttat 52806368  T
Q  373 gaa 375  Q
    |||    
T  52806367 gaa 52806365  T

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