View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_4 (Length: 509)
Name: NF8458_low_4
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 38704509 - 38704266
Alignment:
| Q |
10 |
tattattctccaaactaccttgattcaaatctcttctactctatataaaaccatccactatccctttgcttttcataaaatccaaaagcaatatacaaat |
109 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38704509 |
tattattctccaagctaccttgattcaaatctcttctactctatataaaaccatccactatccctttgcttttcataaaatccaaaagcaatatacaaat |
38704410 |
T |
|
| Q |
110 |
ctattccttagctcctacaattcatcaaaatggcatcaagcaaatccttaatcacaac----tttacttcttgttgtgacaatgtcaagcatgaacctag |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38704409 |
ctattccttagctcctaaaattcatcaaaatggcatcaagcaaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctag |
38704310 |
T |
|
| Q |
206 |
aagctcgtcatcttttgcaaacaacagcacaacagaatttgcct |
249 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
38704309 |
aagctcgtcatcttttgcaaacaacaacacaaccgaatttgcct |
38704266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 33 - 410
Target Start/End: Original strand, 37181314 - 37181702
Alignment:
| Q |
33 |
ttcaaatctcttctactctatataaaaccatccactatccctttgcttttcataaaatccaaaagcaa--------tatacaaatctattccttagctcc |
124 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| |||||| ||| |||| |||||||||||||| ||||||||| | ||||||||||| |
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| T |
37181314 |
ttcaaatctctctcactctatataagaccatccactacccctttccttctcatcaaatccaaaagcaaattctctctatacaaatacagtccttagctcc |
37181413 |
T |
|
| Q |
125 |
tacaattcatcaa------aatggcatcaagcaaatccttaatcacaactttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatct |
218 |
Q |
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||||||||||||| |||||| |||| ||||||||| || ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
37181414 |
tacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatct |
37181513 |
T |
|
| Q |
219 |
tttgcaaacaacagcacaacagaatttgcctagcattcccactttaccaaaaccaacaacgttgccaccattgccttcaattccaaatatgcctcaagga |
318 |
Q |
| |
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||||||||| || |||||| ||||| || ||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| |
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| T |
37181514 |
tttgcaaactaccacacaaccaaatttaccagccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaagga |
37181613 |
T |
|
| Q |
319 |
aatcttcctccattgcctactaccattccatctctacctaagagcactatgccaccacttcctagctttcctaccaatcttccaacacttcc |
410 |
Q |
| |
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||||||||||||||||||||| || || ||| | ||||| |||||||||||||||||| || ||||||| ||| |||||||| |||| |
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| T |
37181614 |
aatcttcctccattgcctact---atcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattcc |
37181702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 138 - 410
Target Start/End: Complemental strand, 37187984 - 37187718
Alignment:
| Q |
138 |
aatggcatcaagcaaatccttaatcacaactttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaacagcacaa |
237 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| || |||||| ||| |
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| T |
37187984 |
aatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttttacagacaaca---caa |
37187888 |
T |
|
| Q |
238 |
cagaatttgcctagcattcccactttaccaaaaccaacaacgttgccaccattgccttcaattccaaatatgcctcaaggaaatcttcctccattgccta |
337 |
Q |
| |
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| |||||||||| |||||||| ||||||||| ||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37187887 |
ccaaatttgcctaacattcccaatttaccaaatccaactacattaccacctttgccttcaattccaaatatgcctcagggaaatcttcctccattgccta |
37187788 |
T |
|
| Q |
338 |
ctaccattccatctctacctaagagcactatgccaccacttcctagctttcctaccaatcttccaacacttcc |
410 |
Q |
| |
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|| || || ||| | ||||| |||||||||||||||||||||||||||||| ||| |||||||| |||| |
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| T |
37187787 |
ct---atcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattcc |
37187718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 150 - 410
Target Start/End: Complemental strand, 37180292 - 37180035
Alignment:
| Q |
150 |
caaatccttaatcacaactttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaacagcacaacagaatttgcct |
249 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| |||||||||||||| || |||||| ||||| || |
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| T |
37180292 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttacca |
37180193 |
T |
|
| Q |
250 |
agcattcccactttaccaaaaccaacaacgttgccaccattgccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactaccattccat |
349 |
Q |
| |
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| ||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || || | |
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| T |
37180192 |
accattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctact---atccctt |
37180096 |
T |
|
| Q |
350 |
ctctacctaagagcactatgccaccacttcctagctttcctaccaatcttccaacacttcc |
410 |
Q |
| |
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|| | ||||| |||||||||||||||||| || ||||||| ||| |||||||| |||| |
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| T |
37180095 |
ctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattcc |
37180035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 150 - 410
Target Start/End: Original strand, 37189562 - 37189819
Alignment:
| Q |
150 |
caaatccttaatcacaactttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaacagcacaacagaatttgcct |
249 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| |||||||||||||| || |||||| ||||| || |
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| T |
37189562 |
caaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttacca |
37189661 |
T |
|
| Q |
250 |
agcattcccactttaccaaaaccaacaacgttgccaccattgccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactaccattccat |
349 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || || | |
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| T |
37189662 |
accattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctact---atccctt |
37189758 |
T |
|
| Q |
350 |
ctctacctaagagcactatgccaccacttcctagctttcctaccaatcttccaacacttcc |
410 |
Q |
| |
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|| | ||||| |||||||||||||||||| || ||||||| ||| |||||||| |||| |
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|
| T |
37189759 |
ctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattcc |
37189819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 38704271 - 38704139
Alignment:
| Q |
289 |
ttgccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactaccattccatctctacctaagagca------ctatgccaccacttccta |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
38704271 |
ttgccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactaccattccatctctacctaagctcactatgtctatgccaccacttccta |
38704172 |
T |
|
| Q |
383 |
gctttcctaccaatcttccaacacttccttcaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
38704171 |
gctttcctaccaatcttccaacacttccttcaa |
38704139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 27102789 - 27102898
Alignment:
| Q |
167 |
ctttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaacagcacaacagaatttgcctagcattcccactttacc |
266 |
Q |
| |
|
||||||||||| |||| || |||||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||||||||| |
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| T |
27102789 |
ctttacttctttttgttaccttgtcaaacatgaacctagaagctcgcaaccttttgcaaacaactacacaacccaatttgccaagcattcccactttacc |
27102888 |
T |
|
| Q |
267 |
aaaaccaaca |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
27102889 |
aaaaccaaca |
27102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 27096701 - 27096785
Alignment:
| Q |
310 |
cctcaaggaaatcttcctccattgcctactaccattccatctctacctaagagcactatgccaccacttcctagctttcctaccaatc |
397 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| | || ||| | |||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatc---ccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatc |
27096785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 27096525 - 27096613
Alignment:
| Q |
188 |
tgtcaagcatgaacctagaagctcgtcatcttttgcaaacaacagcacaacagaatttgcctagcattcccactttaccaaaaccaaca |
276 |
Q |
| |
|
|||||| ||||| |||||||||||| | |||||||||||||| |||||| |||||||| | |||||||||||| ||||| |||||| |
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|
| T |
27096525 |
tgtcaaacatgagcctagaagctcgaaaccttttgcaaacaaccacacaacccaatttgccaaacattcccactttgccaaatccaaca |
27096613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 27103004 - 27103088
Alignment:
| Q |
310 |
cctcaaggaaatcttcctccattgcctactaccattccatctctacctaagagcactatgccaccacttcctagctttcctaccaatc |
397 |
Q |
| |
|
|||||||| ||| |||||||||||||||| ||| || || | |||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
27103004 |
cctcaaggtaatgttcctccattgcctac---catcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaatc |
27103088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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