View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8458_low_5 (Length: 427)
Name: NF8458_low_5
Description: NF8458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8458_low_5 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 154 - 427
Target Start/End: Complemental strand, 18101450 - 18101177
Alignment:
| Q |
154 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
253 |
Q |
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| T |
18101450 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
18101351 |
T |
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| Q |
254 |
cccaatccaatttatgtactaacaccaaacaaatttccaagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
353 |
Q |
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| T |
18101350 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
18101251 |
T |
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| Q |
354 |
ccaaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattc |
427 |
Q |
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| T |
18101250 |
caaaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattc |
18101177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 18101602 - 18101483
Alignment:
| Q |
1 |
tatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaag |
100 |
Q |
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| T |
18101602 |
tatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaag |
18101503 |
T |
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| Q |
101 |
aaataacaatgacacacaag |
120 |
Q |
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| T |
18101502 |
aaataacaatgacacacaag |
18101483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 154 - 427
Target Start/End: Complemental strand, 37859058 - 37858785
Alignment:
| Q |
154 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
253 |
Q |
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| T |
37859058 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
37858959 |
T |
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| Q |
254 |
cccaatccaatttatgtactaacaccaaacaaatttccaagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
353 |
Q |
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| T |
37858958 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
37858859 |
T |
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| Q |
354 |
ccaaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattc |
427 |
Q |
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| T |
37858858 |
caaaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattc |
37858785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37859210 - 37859091
Alignment:
| Q |
1 |
tatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859210 |
tatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatgatgaag |
37859111 |
T |
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| Q |
101 |
aaataacaatgacacacaag |
120 |
Q |
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| T |
37859110 |
aaataacaatgacacacaag |
37859091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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